RNA id: TU200503


Basic Information

Item Value
RNA id TU200503
length 2913
lncRNA type read_through
GC content 0.45
exon number 15
gene id G176519
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 3930981 ~ 4010044 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCGAAATAAAGCCTTTATTTGTAAACAGTATTCCAATAATAAGATTCAAGAAAAAGCCAAATCAAATGACACAGAACATCATAACAGAAGAGTAAAGACATTCTGAGCCTGAGACCTCCAGCAGCATGCACAAAAACCATAAACATGATCAACAATGCACATTCATTCACTTCACATTAACTCCTATATACAAATCAATCTTACTCAGTCTCCATAAGTTACAGTTTTGGTTTACAAGAGATCAGCTGAAAATAACATAGAAAAATGAAAAGAATGATCAAATTTGCTTAACACAGAGTGGTGTGTTTTAAGCAACTCCAAACCACCATTATTTATTTACACTCCATATCATATCTTGTTTCAATACAAGAAAAATACCAAGTCACCCTGTCTGGGCGCAGTTTGGTTTACCAAACACACTTATTATTTGCTTTGCCAAATATTATTAATCATGCCTGCAAACCCCCCCACACACCACAGAGATCATTGTGCCAAAAAGCAGAGCATGATTGATGAAGATGAAAGTCTCCATGCTTGTTGTAAACTATTGCAGTCACTAGGTGGCAATGCAGCTGTAGATCAGACAAGAGAGCACCTGAATCTAGCACTTAAACTGAACCCAGAAATACTAAACTGCATGAGTTTTCCAAAGAATAAAATACATTCATTGAAATATATACACCTCGATAAAATCAAATGTGCAAAGTAAACAAATCTGCAAAGGGTGGTTGATTTACCTGTTAGATTACTTCATTATGTTGAATGGTTAAAGCACCTAAACTAGACCAAAGAATGAAATTGGGAAACTTTCAGAAATGAAATTCAGTAAACAGAGTACAAATCTGTTAGAATGAAATGTCTGACTCTTATTTATAAAAAGCATAATTGTTCTTTAAAACTGAGCATGCCGCTTGCTGAGAAATAAACTTAAAGAGAAAGAGAGACAGAGACAGAGAGAGAGACAGAGAGAGAGAGATAATAATAAAATAACGCTCCACCACTGTGTTCACACACTCTTGATTGTTCACTGCTCTTCAGACAGAGAGCATTCAGACAGCGAGCGTTCCCTCCTCTCACGCGTGGCCACGTAGTTCAGCAGGTCAATGGCTGTCACCACCCCAAATACCATCTGCCTCATTTTGGGGGATCCATCACTCATGTACTGAATCTGTTCATGCACAACAAGGGCGAAATGGTCTGTCTCGAGGATACGTGAGAGTTTGCCCAGGTTATCAGTTAGGCGCACCTGTTTAAACTGTTTGTAGAGAACTTTGCTTATGGGATCAGATGGCCTAACCTTCCCAGCCAGAACAGACGAGAGCATGTTCCCCAACGTGACCATGCCCAGAATGTGCCCAGCCTCGTCCACCACAGGTGCTTGGTCAAAGGCCTTTTCTTTCAAGATCTGAATGGTCTTCTTGATGGACACTAACGGCAGCACAGTTAGGGGGGCGGAGAGCCGGAGCTCCTGTAGAGTCAGATTCCACCACCATGGCTTCTTGACGACAAGATCCTCCTCGCTCAGGAAGCCCTTTTCACACATCCACTTGTCACTAAGAAATTTAGACATGTAGTTGCGGATGGAGTCGGGAAGGATCACCACACAGCGCTGGCCTTCCTTCAGCTCTTTGGCTACATGCACTGCTGCAGACATGGCTGTGCCTGAACTACCGCCGCACAGAAGTCCCTCCTCTCTGATGAGCATACGAGACATGGCAAAGGACTCTTCATCATTGGACTTGTACCAACTATCCACCACAGATCTGTCCAGAACAGTAGGGATGAAGTCATATCCGATGCCCTCCACCTCATACTGAGTCTTATCAGTCTTGTTCAGTTCTTCCGGCTCAGCAAGGATGGAGCCCTCAGGGTCCACTCCAACTATCTTGATATTGGGGCATTTCTCCTTCAGCTTGCGGGCGACACCAGTGATGGTACCACCAGTGCCAGCTCCAGCCACCAGCATGTCTATTTTACCATCACACTGCTCCAGAATCTCCTCTGCAGTGGTGTCATAGTGGGCCAGGGGGTTGCTGGGATTACGGTACTGATCCAGAATGTGAGCATTAGGAATCTCATTCTTCAAACGCCAAGCCACACCCACATGAGACTCAGGAGAGTCAAAACGAGCAGAGGTAGGGGTACGAACAATCTCAGCACCAAGAGCACGGAGCACGTCCACCTTTTCCATGCTCATCTTTTCAGGCATGACAATGATGCAGCGATAACCTTTGACTGCTGCTGCCAGCGCAAGTCCAATACCTGTGTTTCCTGATGTGGGTTCAATGATAGTGTCTCCAGGTTTGAGGATGCCGTCTCGCTCAGCATCCTCTACCATTCGCAGACTGATTCGGTCCTTCACGCTGCCGCCAGCATTGAAGAATTCACATTTAGCCAAAAGCTCACACTTGAGGCCAAAAGCATTGGGGATCTTGTTCATGCGGACCATTGGGGTCTCTCCAATCTTGCTTAAGATGTTGGGGAGGATACTGGGCGTCTTTGTCCGTTGGAAGTGGTTGTGGGGCGACTCTGTGTTTGGGTCACCAAGTTTCCATGTGCATCTGCTGGGCAAATCTGGTCGAATCCATTTCCTCTCCATGGTGACCTCTGATCCATTCTCCATGTGCTCTCCATTCTTACTCTTCACATGGTGACCATTTGTTTCATTCACATGGGCTGTGCCATTCACATTTAACTCGTGTCCAGCATTTCCGTTTAAGACGGCATCGACTTTCAGCTTGGCGTCCACGTTGATGATAGTTTCTCCATTTGCAGCAATCGTGAGGACCTTGGCAGCATGTGGGCAGACGGGACCAGTCCCAACTGACTCTGAACTAGATGGTACTGATGGCATGGCTTACCTGACTATCAGACAAACACGAACTTGCGAGCCGGTGAGGTCCGATTACACA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200646 lncRNA upstream 73357 3913950 ~ 3915351 (+) True G176652
TU200643 lncRNA upstream 78797 3909615 ~ 3909911 (+) True G176649
TU200629 lncRNA upstream 119703 3868798 ~ 3869005 (+) True G176636
TU200628 lncRNA upstream 120278 3868213 ~ 3868430 (+) True G176635
TU200626 lncRNA upstream 121588 3866842 ~ 3867120 (+) True G176633
TU200666 lncRNA downstream 9403 4019447 ~ 4019674 (+) False G176672
TU200668 lncRNA downstream 9403 4019447 ~ 4019931 (+) True G176672
TU200670 lncRNA downstream 10403 4020447 ~ 4020837 (+) True G176673
TU200676 lncRNA downstream 23211 4033255 ~ 4033487 (+) True G176679
TU200677 lncRNA downstream 25124 4035168 ~ 4035596 (+) True G176680
CI01000037_03946645_03954021.mRNA mRNA upstream 34394 3945995 ~ 3954314 (+) True CI01000037_03946645_03954021
CI01000037_03901647_03902747.mRNA mRNA upstream 85961 3899399 ~ 3902747 (+) True CI01000037_03901647_03902747
CI01000037_03875808_03891566.mRNA mRNA upstream 96321 3875488 ~ 3892387 (+) True CI01000037_03875808_03891566
CI01000037_03855991_03860283.mRNA mRNA upstream 127407 3855991 ~ 3861301 (+) True CI01000037_03855991_03860283
CI01000037_03824405_03854894.mRNA mRNA upstream 133514 3824208 ~ 3855194 (+) True CI01000037_03824405_03854894
CI01000037_04050140_04050646.mRNA mRNA downstream 39121 4049165 ~ 4050883 (+) False CI01000037_04050140_04050646
CI01000037_04061560_04065802.mRNA mRNA downstream 51516 4061560 ~ 4066041 (+) False CI01000037_04061560_04065802
CI01000037_04080145_04081691.mRNA mRNA downstream 68437 4078481 ~ 4082806 (+) True CI01000037_04080145_04081691
CI01000037_04168194_04170478.mRNA mRNA downstream 158150 4168194 ~ 4171137 (+) True CI01000037_04168194_04170478
CI01000037_04175833_04178651.mRNA mRNA downstream 165789 4175833 ~ 4178651 (+) True CI01000037_04175833_04178651
TU200353 other upstream 900740 2976862 ~ 3087968 (+) True G176377
TU200317 other upstream 1148655 2839760 ~ 2840053 (+) True G176346
TU199493 other upstream 2018317 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 2311301 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198740 other upstream 2374434 1613890 ~ 1614274 (+) False G174949
TU200774 other downstream 203239 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073919 True 2561 mRNA 0.48 15 NC_007120.7 9183837 ~ 9228941 (-)