RNA id: TCONS_00016567


Basic Information

Item Value
RNA id TCONS_00016567
length 1988
RNA type mRNA
GC content 0.40
exon number 3
gene id XLOC_008214
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 863931 ~ 910502 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCATAAGGGTGCGCCACGCTGCTGCCGAGTTTgtttcaactggagaaagGACAAACACAGAAGATCTGCTGAAGTGACTGAGCTCagactgttataaagatggcgtttattaaagaggagagtgaagacatcaagattgaagaaacattcacagtcaaacatgaagagactgaagaagctttcagagtcaaacatgaagatcctgaggaacaaacagAAAACCTGATGCCAGTCAAAGAGGAGAGTCAAGATCAGAACAAAGTAGAAGAGAAGGATCAGCATGAGGAATGTCTGGATTTCAGTTCTGGAGAAAAATCAGAACAGACAAAGACCTCATCACAAACAACAGCCGAATCTTATACCTGCcaccagtgtggaaagagtttcacacgGAAACAAAACCTCACAAAacatatgaggattcacactggagaaaagccttacacttgccaacagtgtggaaagagttttaatcGGAGAGAAAACTTGAAAGAGCATATGAAGATTCATAATGGAGAAAAACTTTACACTTGCCAACAGTGTGAAAAAAGTTTCACTTGGAAACAAAACCTTACAACccatatgaggattcacactggagaaaagccattCAATTGCCATtattgtggaaagagtttcacttgTAAACAACACCTTACAGACCATATGAAGATTCACAATGGAGAAAAGCCCCATGCCTGCCTACAGTGTGAAAAGAGTTTCACTTGGAAACATCACCTTGTAACccatatgaggattcacactggagaaaaacaacACAGCTGCCTACAGTGTGGAAAGGCTTTCACACGGAAACTAAACCTTACaaaacacatgaggattcacactggagaaaaaccttacaattgccaacagtgtggaaaaagtttttCTTGGAAACAATACCTTACAGACCATATGAGGACTCACACTGCTCACACTGCAGAAAAGCAACATACCTGCCACCAGTGTGGAAAAGGTTTCACTTGCAAACGAAACCTTTTAAATCATATGATTATTCACACAGGAGAAAAGCCTTACACTTGCCaacaatgtggaaagagtttcaatcGGAGGCAAAACTTAAAAGAACATGAGAAGATTCACAATGGAGAAAAACTTTACatttgccaacagtgtggaaagagtttcgctCGCAAACAATACCTTATAATCCATATGAGGATTCATACAGGAGAAAAGCCTTACaattgccaacagtgtggaaGGAGTTTTACCTATCAACAACACCTTACAGACCATATGAGGATGCTCCATGGAGAAAAGCGTTATACCTGCctacagtgtggaaagagtttctctTGGAATCGTCACCTTGCCATccatatgaggattcacactggagaaaagccttacACTTGCCAgcaatgtggaaagagttttaatcGGAGGCAAAACTTAAAAGAGCATATGAAGATTCATAATAGAGAAAAGCTTTACACTTGCctacagtgtggaaagagtttcacttggaaacaaaaccttacaatccatatgaggattcacactggagtaAAGCCGTTCAATTGCCAACAGTGTGAAAAGAGTTTCACTTGTAAACAACACCTTACAGACCAtgtgaggattcacactggagaaaagccttacACTTGCCAACAATGTGGAAAGACTTTCTCACGGAAACAATACCTTACACAccatatgaggattcacactggagaaaaacgaCACAACTGCCTacattgtggaaagagtttcacttgGAAACATCACCTTGTAACccatatgaggattcacactgaaAAAAAGCCTTACAATTGCAAACACTGTGGAAAGGGTTTTTCTTGTAAAGAATACCTTACAGACCATAtgaagattcacactggagaaaaacgaTATAGCTGCCTACAGTGTGGAAAGGGTTTCACACGGAAACTAAACCTTACaaaacacatgaggattcacactggagaaaagccttcacttgccaacagtgtggaatAA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000193867

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018745 lncRNA upstream 45110 823442 ~ 826975 (+) True XLOC_008210
TCONS_00018744 lncRNA upstream 103650 768181 ~ 768435 (+) True XLOC_008206
TCONS_00018864 lncRNA upstream 202641 658362 ~ 669444 (+) True XLOC_008204
TCONS_00018863 lncRNA upstream 324204 546153 ~ 547881 (+) True XLOC_008200
TCONS_00018862 lncRNA upstream 372262 497208 ~ 499823 (+) True XLOC_008197
TCONS_00018746 lncRNA downstream 314433 1207720 ~ 1211561 (+) False XLOC_008224
TCONS_00018748 lncRNA downstream 314433 1207720 ~ 1220123 (+) False XLOC_008224
TCONS_00018747 lncRNA downstream 314433 1207720 ~ 1220123 (+) True XLOC_008224
TCONS_00018749 lncRNA downstream 328530 1221817 ~ 1234693 (+) True XLOC_008225
TCONS_00016601 lncRNA downstream 767805 1661092 ~ 1668218 (+) True XLOC_008231
TCONS_00016565 mRNA upstream 116 864761 ~ 871969 (+) False XLOC_008214
TCONS_00016564 mRNA upstream 3966 863931 ~ 868119 (+) False XLOC_008214
TCONS_00016562 mRNA upstream 11955 851519 ~ 860130 (+) False XLOC_008213
TCONS_00016563 mRNA upstream 13054 857148 ~ 859031 (+) True XLOC_008213
TCONS_00016561 mRNA upstream 15923 850829 ~ 856162 (+) False XLOC_008213
TCONS_00016575 mRNA downstream 3993 897280 ~ 900048 (+) False XLOC_008214
TCONS_00016576 mRNA downstream 10456 903743 ~ 909931 (+) True XLOC_008214
TCONS_00016577 mRNA downstream 41373 934660 ~ 941773 (+) True XLOC_008215
TCONS_00016578 mRNA downstream 70005 963292 ~ 976353 (+) True XLOC_008216
TCONS_00016579 mRNA downstream 90454 983741 ~ 993433 (+) True XLOC_008217
TCONS_00016581 other downstream 185702 1078989 ~ 1079104 (+) True XLOC_008218
TCONS_00016597 other downstream 650399 1543686 ~ 1543768 (+) True XLOC_008229
TCONS_00016598 other downstream 650570 1543857 ~ 1543943 (+) True XLOC_008230
TCONS_00016599 other downstream 667378 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016606 other downstream 980371 1873658 ~ 1873778 (+) True XLOC_008236

Expression Profile

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