RNA id: TU275746


Basic Information

Item Value
RNA id TU275746
length 232
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G242953
representative True

Chromosome Information

Item Value
chromosome id CI01000056
NCBI id null
chromosome length 2086016
location 1617548 ~ 1617779 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTATACACAATAACACTTGATTAACTCGTTAATTATGTGCTAACTGTATATCTACTGTATATCTCAATAGTAAATGAAAAAGTACAATGTAAAGTTCGTTGGGACAAACTTTTATGTTTTGCTTGACAAAAATTTAAAAGTTTTATAAGCTTCCTAGCATGTTTTTCATGTTGCTAGCATGTCTTAGCATGTGTCTAGCATTATTCTGCATTTTGCTAGCATATAGGGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU275745 lncRNA upstream 326 1616957 ~ 1617222 (+) True G242952
TU275703 lncRNA upstream 3447 1613732 ~ 1614101 (+) True G242913
TU275742 lncRNA upstream 7120 1610175 ~ 1610428 (+) True G242949
TU275741 lncRNA upstream 7681 1609579 ~ 1609867 (+) True G242948
TU275740 lncRNA upstream 8412 1608595 ~ 1609136 (+) True G242947
TU275682 lncRNA downstream 2887 1620666 ~ 1668978 (+) True G242892
TU275756 lncRNA downstream 40487 1658266 ~ 1658746 (+) True G242963
TU275758 lncRNA downstream 51819 1669598 ~ 1669801 (+) True G242965
TU275760 lncRNA downstream 53560 1671339 ~ 1671704 (+) True G242967
TU275762 lncRNA downstream 55494 1673273 ~ 1673488 (+) True G242969
CI01000056_01306290_01314471.mRNA mRNA upstream 302922 1305876 ~ 1314626 (+) True CI01000056_01306290_01314471
CI01000056_01059066_01060580.mRNA mRNA upstream 556934 1059066 ~ 1060614 (+) False CI01000056_01059066_01060580
CI01000056_00601216_00610322.mRNA mRNA upstream 1007143 600353 ~ 610405 (+) True CI01000056_00601216_00610322
CI01000056_00376962_00378136.mRNA mRNA upstream 1239040 376962 ~ 378508 (+) True CI01000056_00376962_00378136
CI01000056_00349501_00362980.mRNA mRNA upstream 1254568 349501 ~ 362980 (+) True CI01000056_00349501_00362980
CI01000056_01714213_01714936.mRNA mRNA downstream 96163 1713942 ~ 1714975 (+) True CI01000056_01714213_01714936
CI01000056_01720495_01737951.mRNA mRNA downstream 102716 1720495 ~ 1738749 (+) True CI01000056_01720495_01737951
CI01000056_01749027_01767554.mRNA mRNA downstream 131097 1748876 ~ 1767853 (+) True CI01000056_01749027_01767554
CI01000056_01780748_01797031.mRNA mRNA downstream 162969 1780748 ~ 1797042 (+) True CI01000056_01780748_01797031
CI01000056_01804273_01835065.mRNA mRNA downstream 186425 1804204 ~ 1835717 (+) True CI01000056_01804273_01835065
TU275453 other upstream 554704 1058889 ~ 1062844 (+) True CI01000056_01059066_01060580
TU274694 other upstream 1456598 155068 ~ 160950 (+) True G241982

Expression Profile