RNA id: TCONS_00001348


Basic Information

Item Value
RNA id TCONS_00001348
length 3287
RNA type mRNA
GC content 0.44
exon number 2
gene id XLOC_000849
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 58312187 ~ 58466934 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTTAattgtgtgaatttttttttttttaatttgtgtccTGTCAGCATCAGCAAGAGAAAGGGACAGCGTTTACAGTCTAAAGAGTCCAGCTGTGTGTCTGTAAAGAGTAACCGATCCATCACCCCACCTGAAAACTTTAGAGATGAACCAGCAACCTCCGACTTCAGGTGGAAGAAAGAAATTGGAGTTAAATCAGAGGATAATATGTTACAGAAAATTAAAaaccagcacaaaaccagcatgaagaacaaatatgagagattatttgagggaaacACACTCCAAGAGAACCAAACCCTCCTGAACCGGATCTACACCCAGCTGTACATCATAgagggagagagtgaaggagtgaatgaagaacatgaggttttacagatggagaaaacagCCAGAACAAAACACTCCCAACACACTCCaatctactgcaatgacatctttaaagagGAGAAAGAGCAAATCAAGACTGTTCttactaaaggcatcgctggaatcggaaaaaccgtctctgtgcagaagttcattctggactgggccgagggaaaagccaatcaggatgtagatttcatgtttgtgcttccatttcgagagctgaacttgatcagagatcatcagtacagtcttcacacacttctgctggactttcatcctgaacttgaagatctgaagcccaagatttatgaggagtgtaaagttgtgttcatctttgatggtctggatgaaagcagaatcacactgatgttttcagACGCTCAGAAAGTTTGTGATGTGACTGAgacttcatcagtggctgtgttgatgtcaAAGCTGATGAAAGGAgagctgcttccctctgctctcatctggatcacctccagaccagcagcagccaatcagatcccctccaaatacatcaagcgtctgacagaaattcagggattcactgagcctcagaaggaggaatatttcaggaagagaatcagtgagcagcatcaagccagcagaatcatctcacacatcagaagagcaagaagcctccacatcatgtgccacatacccgtcttctgctggatctcatccactgtgcttcagaagctcctggaagaagatctgagtgcagaaatccctcaaactctgactgaaatgtacatccacttcctgctgattcagaccAACATGAGGaatcagaagtatgaagagagagatccagagaaactcctgcagtccaacagagaaGTGATtgtcaaacttgctgaagtggctttcagacagctgatgaagggcaatgtgatgttctatgaggaggacctgattgagagcggcgtAGACGTCTTTGACgcctcagtgtattctgggatttgcactgagatctttaaggaggaatctgtgattcagaagaggaaagtctacagcttcaccCATCTCAGCATTCAGGAGTTCCTCGCTGCTTTCCATGTGTTTTACTACCACATAACCTGCTCCACAGAGGCATGTTTTGATTCACTGCATGATTTACAAAGAAGAGCAGTAGATAAAGCCATTGAGAGTGAGAATGGGCgtctggatctgttcctgcggttcctgctgggcgtctcattggagtccaatcagagactcttccaggatctactgacacacacagagaagagctcagagagcatcaggagaagcacacagtacattaaagagaAGATCAGAGATGGACATGGACTCTCcactgaaagatccatcaatctgttcctctgtctgctggaagtgaaagatcagactctgtccagagagattcaggagtttgtgaaatcagacaaacagtcagagaagaaactctctcctgctcactgctcaacaatcgcCTACATGCTTCAGATGTCAAAGGAGGTGCTGGATGAGCTGGAGCTCCAGAAATACAACACATCAGATGAGGGCAGGAAAAGACTGATACCAGCCGTCAGCAACTGCACAAGAGCTCTTCTTGCTGGCTGTAATCTCTCTGCTCAGGATTGTGAAATTGTGTCGTCAGTTcttcaatcctcaaactgtgtcctgagagagctggacctgagtaacaatgacctgcaggattcaggagtgaagctgctctctgctggactgaagagtccaaactgtcagctggagatactgaggtattaagaataaataaaagagaGAATTATGTCAATATCTGAAGATGATCCATCTGTTTGTGCATTGGTGTGTGCaggttgtctggctgtatggtgacagaggaaggctgtggttttctatcttcagctctgagttcaaacccctcacacctgagagagctggatctgagctacaatcacccAGGACAATCAGGAGTCCAGCTGCTCCAACACACAATAGAGAAACTCAAGTAAGTGTGACAaaatcattcattgattcatttgtgAGCGTTTACGTGAGTTTTCAAACATTCATTATTATGCTTTGGAAGAATAATTTCTTCTTCTGAATAATGTGTATTTTCTAGTGTGGACAATGGAGGTGCTTTAAGAATCACACCAGGACTGAATAAATGTGGGTCCTCTCATACTTTGCATGGCTCTTACAGTTCTGAACAGCGctgtgaaatgtttttaatatgtttttgatcTCTCCTCTTGTGTTCAGATGCAGTAGatctcactctggatccaaacactgCAAACACTAACATCATCCTGTCTGAGGACAACAGAAAGGCAACATACACAGAAGAGCcacagccgtatcctgatcaccCAGAGAGATTTGTTGGTGGTGAACGGGTTCTGTGCCAAGAGAAACTAACTGGGCGCTGTTACTGGGAGGTGAAATGGAGTGGATGGGGTCATGCAGCGGTGACGTATAGAGgaatcaggaggaagggaggcaGCTACTGCAGGTTTGGGTACAATGACAAATCCTGGAGTCTGGATTACTCTGATGACAGATTCACTGTCTGGCACAATAAAAAGAGAATCGACATACCAGCCCTGTCACCCCAGTCCAATAGAGTAGGAGTGTATGTGGACGTGCCGTCAGGCTCTCTGTCCTTCTACAGcatctctgacacacacacactcacacacttacacacattcaACACCACATTCACTGAAGACCTCTATGCTGGGTTCAGAGTTTATGAGTCTGAACTGTCTTTGTGCCAGAGTACACCACACAGAGACAAATTTTAATTTAGCCTGTGATCATTTTTTTCTACAGAACTTTTGTAGGACTTTtctgttctgaaaaaaaaaattcatagacGCCTTGTTCTTAAAATAAACATATGTCTGTGAAAGATCCATCTTCTGCTGTTGT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081031-22 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000138007

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001323 lncRNA upstream 295316 58003615 ~ 58017364 (+) True XLOC_000829
TCONS_00001322 lncRNA upstream 327792 57983974 ~ 57984888 (+) True XLOC_000828
TCONS_00001318 lncRNA upstream 381088 57927489 ~ 57931592 (+) False XLOC_000826
TCONS_00003265 lncRNA downstream 59457 58526391 ~ 58530485 (+) True XLOC_000862
TCONS_00003266 lncRNA downstream 110985 58577919 ~ 58585132 (+) True XLOC_000864
TCONS_00003267 lncRNA downstream 119419 58586353 ~ 58588475 (+) False XLOC_000865
TCONS_00003268 lncRNA downstream 121286 58588220 ~ 58595767 (+) True XLOC_000865
TCONS_00003269 lncRNA downstream 179751 58646685 ~ 58669075 (+) True XLOC_000871
TCONS_00001346 mRNA upstream 3162 58303892 ~ 58309518 (+) True XLOC_000848
TCONS_00001345 mRNA upstream 15035 58290933 ~ 58297645 (+) True XLOC_000847
TCONS_00001344 mRNA upstream 27205 58282449 ~ 58285475 (+) True XLOC_000846
TCONS_00001343 mRNA upstream 44449 58260886 ~ 58268231 (+) True XLOC_000845
TCONS_00001342 mRNA upstream 54781 58242498 ~ 58257899 (+) True XLOC_000844
TCONS_00001361 mRNA downstream 3353 58470287 ~ 58475330 (+) False XLOC_000861
TCONS_00001362 mRNA downstream 3403 58470337 ~ 58475718 (+) True XLOC_000861
TCONS_00001363 mRNA downstream 41856 58508790 ~ 58526999 (+) False XLOC_000862
TCONS_00001364 mRNA downstream 68372 58535306 ~ 58537356 (+) True XLOC_000863
TCONS_00001365 mRNA downstream 134746 58601680 ~ 58606490 (+) False XLOC_000866
TCONS_00001335 other upstream 139091 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001304 other upstream 957647 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001233 other upstream 3015429 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 3184101 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 4126524 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001394 other downstream 664358 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) LOC110529023 True 1845 mRNA 0.43 1 NC_048571.1 72752611 ~ 72754455 (+)