RNA id: TCONS_00019153


Basic Information

Item Value
RNA id TCONS_00019153
length 754
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_009202
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 22588504 ~ 22594885 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTGTCTACAGCGTGATGTTCATtctcagcgtctcagtctagttggttttggttttggATGGCGCTGGGAAAGAACATTCACGTTGCATATGCGAGCGCAGGctgttaaGAGATGCTGGCTGTTCTCGCTCCGACTGCCACTCCAAAAAGCAAATGGCCTGGGGCTCCGGAACTTCAGCCCCCATTAGCAATGAAACAAATCACAGCGGTTGCAAAGGCCTACCTGTGAAATGTGCACCATTTGTCTCCGATGAACTTCTCTCTGAGCCTGGAAGCTTATTTGCGGAGGTGGAATCCTTCAAAAGTGTACAGACATCTACACATATCGACTTAAGACCGGCAGAGAGGAAGAGAAACGCCGTCGGACTGATGAAGCTTTGAAAGCTCATGGACGTACAGCGGTGAAGCTGAGGGTAGTATCAGGGAATTGATGTCGACAATGCTAATTTTCAGGTCTGGCAAACTGGAGAAAGCAGTGAAACAGAAAATAGAAAAATGAAAGGCAAGCTCCTGCTCACAGAGTATCCTTCATCATGCAACCATATCTCAAAACAACAACTAGCAATTTCACACAGTAATTGACAAACATTTTGCCGAAATTAGACGCAGGGAAACAACCTTTTGttcagttgtttttctttttgtgtcCTAGCTGTCCATGATGGCAAAGTAGGATTAAAGGTGTAGCTCGGTTCGGTTTGTAGTAATGTTTTTGGTCCTGATTCACTGAGTGCTTACACCATGGGTGGCACAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019152 lncRNA downstream 426526 22160925 ~ 22161978 (-) True XLOC_009198
TCONS_00018093 lncRNA downstream 684278 21900306 ~ 21904226 (-) True XLOC_009195
TCONS_00018083 lncRNA downstream 775056 21805114 ~ 21813448 (-) True XLOC_009192
TCONS_00019151 lncRNA downstream 1080968 21493852 ~ 21507536 (-) False XLOC_009186
TCONS_00018823 lncRNA downstream 1081016 21495320 ~ 21507488 (-) True XLOC_009186
TCONS_00019154 lncRNA upstream 550069 23144954 ~ 23154260 (-) False XLOC_009205
TCONS_00019155 lncRNA upstream 553849 23148734 ~ 23154254 (-) True XLOC_009205
TCONS_00018104 lncRNA upstream 605890 23200775 ~ 23206583 (-) True XLOC_009206
TCONS_00018118 lncRNA upstream 893751 23488636 ~ 23495610 (-) False XLOC_009213
TCONS_00018119 lncRNA upstream 897510 23492395 ~ 23495574 (-) True XLOC_009213
TCONS_00018100 mRNA downstream 284311 22302724 ~ 22304193 (-) True XLOC_009201
TCONS_00018098 mRNA downstream 337415 22164549 ~ 22251089 (-) True XLOC_009199
TCONS_00018097 mRNA downstream 440644 22135987 ~ 22147860 (-) True XLOC_009197
TCONS_00018096 mRNA downstream 448938 22133839 ~ 22139566 (-) False XLOC_009197
TCONS_00018094 mRNA downstream 514189 22046557 ~ 22074315 (-) False XLOC_009196
TCONS_00018103 mRNA upstream 605332 23200217 ~ 23206562 (-) False XLOC_009206
TCONS_00018105 mRNA upstream 676977 23271862 ~ 23342752 (-) True XLOC_009207
TCONS_00018106 mRNA upstream 774135 23369020 ~ 23376541 (-) True XLOC_009208
TCONS_00018107 mRNA upstream 787314 23382199 ~ 23420170 (-) False XLOC_009209
TCONS_00018108 mRNA upstream 788362 23383247 ~ 23420079 (-) True XLOC_009209
TCONS_00018099 other downstream 327507 22260881 ~ 22260997 (-) True XLOC_009200
TCONS_00018076 other downstream 1048228 21521803 ~ 21540276 (-) True XLOC_009187
TCONS_00018069 other downstream 1478896 21079826 ~ 21109608 (-) True XLOC_009180
TCONS_00018066 other downstream 1610256 20960069 ~ 20978248 (-) True XLOC_009178
TCONS_00018065 other downstream 1632050 20948693 ~ 20956454 (-) True XLOC_009177
TCONS_00018101 other upstream 125880 22720765 ~ 22720881 (-) True XLOC_009203
TCONS_00018102 other upstream 360132 22955017 ~ 22955132 (-) True XLOC_009204
TCONS_00018142 other upstream 1564068 24158953 ~ 24159067 (-) True XLOC_009227
TCONS_00018151 other upstream 2313509 24908394 ~ 24908479 (-) True XLOC_009234
TCONS_00018157 other upstream 2489936 25084821 ~ 25093717 (-) False XLOC_009240

Expression Profile

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