RNA id: TCONS_00020629


Basic Information

Item Value
RNA id TCONS_00020629
length 1598
RNA type mRNA
GC content 0.50
exon number 8
gene id XLOC_010511
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 12758494 ~ 12787029 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAGAAAGAAAGGGAAGAACTTTTTCCGACagggtttttcttcttcttccaaaCAGAATTTCCAAACAAAACGTGCTAATATTGTGGCTTCAGACTCTGAAAGAATGTTGCGATAAACAAACGAGAGAAGAGGAGGAGGACAGTTAAACGAGATCATCTTCCTCCCTGCAACAGATGACAGCATTAAACACTGACACTGACACAGCTTGAAGTCGGTGGCCTATTGACAGCATTAAGACAACATCTCCTCGAGCATGACGTCTGAACTGGATTCTAGTTTGACCAGCATTGACTGGCTCCCACAGCTGGGTATCAGCACCTTGCGTTCAGGGAAAGAAAGAGTGGAACGGAAAAAAGAGCGAGGAAGAGAGAAGGATATCCCTCTGATACCCGCACTGTCGCCGGGGTCGAACTCCAAAGTGAAGCCCCCTCACAGCTACGCCACCCTGATCGCCATGGCCATCAGCTCGGCTCCTGAAATGAAGCTGAGTTTGAATGATATTTACACTTGGATCAGCGATACGTTTCCGTATTACTGCAGAGCAGGAAGAGGATGGAAGAACTCAATTCGCCACAATTTGTCCCTCAATAAATGTTTCCGGAAAGTTCCTCGACCTCAGAGTGATCCTGGAAAGGGATCATACTGGACAATGGATGTACCGCCTGAATCCACTCAACCGAGAGGAGTCAAACGTCCTTATACTGATGATGAACATGTAGTAACTCCTTTCCCAGAGACACAACTGCCTGCCAATCAACCGGAGCCCCTCCCCCCTCAGCCAGACACCAAGAGCACATTCCCTCCTCCTCCATGCAAGCAACGTCCAGCCATCCCAGTTCCCTCATCTCTTCCATCAAACCCTCATGCTGATCCTCCTCTTCGCTTCTCCTTTGCTGATTTGAACCTTCCAGATCTGTACAACTCCTTTCAGTCGCTCTGTCGCTCCATGAGAGAGAAGGTCACTTCCCAATCGGACGTTTCCACTTTACTTGGACTCACCCATGATAGTACACCCCTTCACACCCCAACCCTGCCTCCTCTCTCCCCCTGTCCAAACCCCAATATTAACCAGTTTATCAACCCAAACTCAACTCATATTCCAAACCTCAATACCAACGGTAACTTCAATCCAAATGCACCCCATAGCTTtatccccaccctaaacccaaaccAGAACTCTAGCATTCATCCAAACTCGAGCACTGAACCTGACAAGGTGCTTCCCAACGACCTGTTAGAAAGCATGCGTCAGGCCGAACTGCGAGATTGGGCTCTGGATCCAGCACTCTTCACCTCGCTCTGTGATTCGCTCAACCGTTTCTTCACTCACAAGGGTCTCATTGGCTCGTCTTCTGGTGGTCCATCTTCTTTCGGACACATGGCACCACCTTCTGTCAATATGCCCCCCACTAACCCTCCCACACTGTCAAGTTTAACTCAACCATCTCCACTCATTTACCCCTCCCAGCTCCCTCCTGGCAGCGGTGAAGCTCCTCTACAGGGTCCCAGGAGGAACCTGACCCCTCTTGCCCAGAACCAGACCACACAGACCCCAGGGGGACTGCAGCCCACCACCAGCCAGCCCATGACTCCCAACG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-240 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOXJ2 (forkhead box J2).

Ensembl:

ensembl_id ENSDART00000139916

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020625 lncRNA downstream 75142 12674230 ~ 12688953 (-) True XLOC_010509
TCONS_00021787 lncRNA downstream 198091 12563230 ~ 12566004 (-) True XLOC_010508
TCONS_00020622 lncRNA downstream 232068 12524732 ~ 12532027 (-) True XLOC_010507
TCONS_00020621 lncRNA downstream 251502 12511186 ~ 12512593 (-) True XLOC_010506
TCONS_00020619 lncRNA downstream 251519 12504929 ~ 12512576 (-) False XLOC_010506
TCONS_00022130 lncRNA upstream 653708 13440737 ~ 13480372 (-) True XLOC_010517
TCONS_00020642 lncRNA upstream 751965 13538994 ~ 13542399 (-) True XLOC_010519
TCONS_00021788 lncRNA upstream 758264 13545293 ~ 13551327 (-) True XLOC_010520
TCONS_00020643 lncRNA upstream 769892 13556921 ~ 13564275 (-) True XLOC_010521
TCONS_00020658 lncRNA upstream 1070643 13857672 ~ 13860263 (-) False XLOC_010530
TCONS_00020626 mRNA downstream 40357 12710904 ~ 12723738 (-) False XLOC_010510
TCONS_00020627 mRNA downstream 40771 12710917 ~ 12723324 (-) True XLOC_010510
TCONS_00020623 mRNA downstream 75015 12669765 ~ 12689080 (-) False XLOC_010509
TCONS_00020624 mRNA downstream 75138 12669816 ~ 12688957 (-) False XLOC_010509
TCONS_00020620 mRNA downstream 251527 12505216 ~ 12512568 (-) False XLOC_010506
TCONS_00020630 mRNA upstream 6882 12793911 ~ 12809886 (-) False XLOC_010512
TCONS_00020631 mRNA upstream 7048 12794077 ~ 12809880 (-) False XLOC_010512
TCONS_00020632 mRNA upstream 8419 12795448 ~ 12809873 (-) True XLOC_010512
TCONS_00020633 mRNA upstream 95352 12882381 ~ 12953739 (-) False XLOC_010513
TCONS_00020634 mRNA upstream 96680 12883709 ~ 12914288 (-) True XLOC_010513
TCONS_00020613 other downstream 269678 12474861 ~ 12494417 (-) False XLOC_010505
TCONS_00020606 other downstream 510624 12253415 ~ 12253471 (-) True XLOC_010500
TCONS_00020605 other downstream 513772 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020604 other downstream 516175 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020603 other downstream 524635 12239407 ~ 12239460 (-) True XLOC_010497
TCONS_00020641 other upstream 735270 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020651 other upstream 881137 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020657 other upstream 1026941 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020665 other upstream 1170727 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020674 other upstream 1598291 14385320 ~ 14396699 (-) True XLOC_010543

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU108964 True 314 lncRNA 0.46 1 CI01000016 5466670 ~ 5466983 (+)
rainbow trout (Oncorhynchus mykiss) TU108964 True 715 lncRNA 0.58 1 NC_048565.1 87945892 ~ 87946606 (-)