RNA id: TCONS_00020643


Basic Information

Item Value
RNA id TCONS_00020643
length 2925
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_010521
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13556921 ~ 13564275 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGTCGGGCCAGTCAGTGCCTGCGCGAGCTGACTCGTGGGATTGAGTCCTTACATGAGACATTCATGACTGATGGCAGTGCCAGAGGCATGGGTGAATATCAGCAGTTACATCAGATGGACAAGGAAATGGAAATGGTACCATTACATGGATTATGCAAGATTTTGTGGCCCTGTCAGGCAATATTTCGATGTTCTCTCAGGACTGACTTACTCCATGAGTACTGAATAATGATTTCTCTACTGCTGAATGTACTGAGGTTGCTATGCGAAAACAACAAACATTGGACAGCTTAGGTGGGATCATTTCACAAAATAAATGGACTGATCTTACTGCAACCAAAGATTGTCAAATGTCTGTGGGTCAAGAAGGCGAGTCATCAGGTGAGGGGCTTTCATTGAAGAATGAACATAAGGACAAGGTGCCCCCAGATGGGTTTCCTGTCCCATCACAAGATCAAACAGAAAATGTAAAGGATTACAGCAAGCAGAATTCACCAAAATATACATCAATCTCAGACCAGATGAGTCCTCTTGAAAACCAGACGCCTAAAAATAAATGTGTCGCTTCTGAGGAAAAGACAAGAAGTCTACCAACAAACATGCAGCTGATACCCAAGATGAAGTCTGATAATGCTAAGACAGACATTTGTGAAGTAACAACCAAAGCTACAAACATTGTTAACACCTCAACAAATGATTTTCTAGAGGTTAAGGTTCAACGACAATCTGTTCTGAATAAAGATTTTCATAATGACAAGCTAGTGTCATCTGATGGATGCAACCTTTTTGAGAAAAAGACGCAGGTCGTTGATGTGGCACATGCAAGAGGGAGTAAACCTGGCATTGACATGAATGCAAACATAGAAAATTTAGAACATACTAAAGAATGCACCGAAGATGATAAAACACAAACTTTGGGTAGCGTAGGAGAGAATAGACTTTTTCTCAGAACAAACTTGGCAATGACAAGTGCAGGAAAATCTCTGGGACAGTATGATCAAGACGAGGTATTAGATTTAAGTCTACCAAAAAAGAAAGATCGCAATAATGAGAGGCAGTGTGAATGGGTTGTAGACCCTGAATTTGAAGGTTCACTTCACATGGAAGTTGACGAAATTGAAGATGAACCCCAACATGATGAAGTGGAGCAGGAGGATGATATTGGATATTGCTGGATGCCTTCAGTAAGTGATGCTCACGCATATCTCCCACAGCCTTGGGATGCACATTTGTCCTCCCCCTCGCTTGAAGCCATGCAATCTTCATCGTACCCCAATGCCATAACCCCAGAGCCAGCGGATACTCTACTTATAGATGACCAGGGCATTCCTTACACACTCACCCTTGATGGACAGAAAATGCCACAAATTGATAATATACAAGATGCTGAAAGGTTCACTGAGCAAACAGCCCAAAGCCCAAGGCAAGCTGAAGATAAGCCCTCTTCATTTGCTGGCGCACAGGATATTGCAGACTCTAGACTGCAGACACAACCTAATTCACTGTGTCCAAATATGTCTCTTGGCCTTGTCTCTGAGGAAGCCTCACAAGTTACCTCAAACCAGGAGACTACAGCTTCTTCCAGTTCTGTAACTCGTGCAAAACCCACAATCATACCTGCTGTGTCTAACTTGGCATCAGTTCCCATTCAGATCGTGGCCAATACTACAGGGTCAAATACTCCCATTCTTCTCCTTCCTCCATCTCAGCTTCAGTCACTTTCCTCACCAGCCTCTAAGGCTAACCCAGGACTAATTACCCTTTCTTTACCAGTTTCTCTCAGTCAGAACACTCAGTCCTCCCCCATGTTCTTAGTTTTGTCATCTCCTCAGGTGTCTTCAACTCCGGGTTTGTCCTTGCCTGGGCAATCATCTCAAATTTCCGCCTCTTCCACTGTTGCACTTCCCTTAGCCACGTGTCCCCTTGATTTGGGATCTACAttaatttcacatccgtcacttCTCAGCCTCAGCACGGTTTCCTCTGCCACAGCTAAAGACATCTCAGGATCCAATAACCCCTCTAATCTTCCTGCTAGCCCTACCTCATCAACTGCTTCCTCTAGCACTTCAACAGTGACCTCTACAAGTCCAGCCAAGCAATTCAGCACTGATGCCTGCTCTGACACACCAGTGCCCACTTCCTTTCGGGAGGCTCTTCTCAGATTGGCTGTGTCTGtggaaaaaaaacaggaaaaccaGACTGAGGCTCAATCGGTCACTTCACCTTCCTCATGTTCAGAAGCAACCAAGCCGGATTCCTCTGCCACAGTCCAGGAAATTAAAAACCAGGAGGTAAACTGTGACGGTGAAACTGAATCTACCTGTGTGGACCAAGCAGACTCACTAGATACCACCTCTTCCACCTCTCCCCTTTGTCCTGTATCACCCACCAATCCTTCAAAGAGCCAAGACTCTTTAGGGCCACGTCGCATTCTTTACTGTCAGTATTGTCCTCGGATCTTCTACTATCTCTCGGACCTTGAGCGCCATTCCATCACACACTCCCAAAGCAAACCCCATGTGTGTCAACTCTGTGGCAAGGCATTCAAAAGATCAAGCCATCTTGAGCGACACAAACACATCCATACAGGACAGAGAAACTTTGTGTGTCAGCTTTGCCCAAGGCGTTTTCGTGAATCAGGGGAGCTAATGAGACACCAGAGAGTACACACCGGTGAAAAACCCTTTCAATGCTTAATATGCCATATGCGTTTTGCAGAGCGCAACACACTGCGACGTCACACAAAGCGCAAGCACCAAGGCCAGCAGCTGGAAGCAGTGGACATGAAGGAGAAGCTAGAAAGTGGAGGGATTTCCCTCGCTGGTGTGCAAGCAGAGGCAGAGGAGAATGCAGAGTGGTACAGTTCAACAGTTCCTGAAATGGAGTCCGACAGTGACACAGGGGGAGAAGGAACTACATGA

Function

GO:

id name namespace
GO:0016579 protein deubiquitination biological_process
GO:0070646 protein modification by small protein removal biological_process
GO:0070647 protein modification by small protein conjugation or removal biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0019783 ubiquitin-like protein-specific protease activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0101005 ubiquitinyl hydrolase activity molecular_function
GO:0019899 enzyme binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00021788 lncRNA downstream 5594 13545293 ~ 13551327 (-) True XLOC_010520
TCONS_00020642 lncRNA downstream 14522 13538994 ~ 13542399 (-) True XLOC_010519
TCONS_00022130 lncRNA downstream 76549 13440737 ~ 13480372 (-) True XLOC_010517
TCONS_00020625 lncRNA downstream 867968 12674230 ~ 12688953 (-) True XLOC_010509
TCONS_00021787 lncRNA downstream 990917 12563230 ~ 12566004 (-) True XLOC_010508
TCONS_00020658 lncRNA upstream 293397 13857672 ~ 13860263 (-) False XLOC_010530
TCONS_00020659 lncRNA upstream 293397 13857672 ~ 13860564 (-) True XLOC_010530
TCONS_00022131 lncRNA upstream 294632 13858907 ~ 13859312 (-) True XLOC_010531
TCONS_00022132 lncRNA upstream 412105 13976380 ~ 14005609 (-) True XLOC_010536
TCONS_00022133 lncRNA upstream 524056 14088331 ~ 14090702 (-) True XLOC_010539
TCONS_00020640 mRNA downstream 40176 13505064 ~ 13516745 (-) True XLOC_010518
TCONS_00020639 mRNA downstream 168100 13181977 ~ 13388821 (-) True XLOC_010516
TCONS_00020638 mRNA downstream 275541 13179146 ~ 13281380 (-) False XLOC_010516
TCONS_00020637 mRNA downstream 447172 13020776 ~ 13109749 (-) True XLOC_010515
TCONS_00020636 mRNA downstream 552755 12963020 ~ 13004166 (-) True XLOC_010514
TCONS_00020644 mRNA upstream 4422 13568697 ~ 13595027 (-) True XLOC_010522
TCONS_00020645 mRNA upstream 35418 13599693 ~ 13613475 (-) False XLOC_010523
TCONS_00020646 mRNA upstream 38905 13603180 ~ 13612650 (-) True XLOC_010523
TCONS_00020647 mRNA upstream 51964 13616239 ~ 13623659 (-) False XLOC_010524
TCONS_00020648 mRNA upstream 51964 13616239 ~ 13623928 (-) False XLOC_010524
TCONS_00020641 other downstream 14461 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020613 other downstream 1062504 12474861 ~ 12494417 (-) False XLOC_010505
TCONS_00020606 other downstream 1303450 12253415 ~ 12253471 (-) True XLOC_010500
TCONS_00020605 other downstream 1306598 12250268 ~ 12250323 (-) True XLOC_010499
TCONS_00020604 other downstream 1309001 12247862 ~ 12247920 (-) True XLOC_010498
TCONS_00020651 other upstream 103891 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020657 other upstream 249695 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020665 other upstream 393481 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020674 other upstream 821045 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020689 other upstream 2249231 15813506 ~ 15814501 (-) True XLOC_010554

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_05759240_05762146.mRNA True 4922 mRNA 0.40 2 CI01000016 5758984 ~ 5763974 (-)