RNA id: TCONS_00022132


Basic Information

Item Value
RNA id TCONS_00022132
length 837
lncRNA type read_through
GC content 0.37
exon number 2
gene id XLOC_010536
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 13976380 ~ 14005609 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAGTAGTAACATATTTTATTAGTGATGGAAGAATTTTGTAATCAGTGCAgagtgcatttattatttaaaaatgtgtaatgcACACCAAAGTGAAtagttttataaactaaacatgaaataaatacaaaacattgaACATATTCCTCTAAGATCATGTCACAATTAATAAATatccatttaaaatatttcttgttCAATtgttaattagaataacacaCATATTGCTTCAGAGGGTGCACGGTAGTTCATACATTTATTGGTAAGCACTGTcgtctcagagcaagaaggttcgATTCGTGAATCccagctggtttgagtcccagctggtttgagtcctggctttctgtgtggagtttgcatgttctccctgtgtgggttttctccaggctGTATTTGGCTGTAatgtgtaagtgagtgtgtgaatgcgagtgtgtatggtttcccagtactgggttgtggctgtaaggccatctgtgtgtaaaacatatcgacccctcataaataagagactaagccaaaggaaatttaTTTTATAGGGTTATATCCTTATAATGTTAGGATAATTATCTTGCATTTAATGAGCTTGTAAAATAGATATTATACAAAATCGTCTTCATTGAATCCAGCTTGAACAGCCTCTTGAATGCTCTTGATTTGCTCTGGAGGTGCAGCAGGCAGAATGGGAAGCAATGCCCGATTGATTATTTCCAGTCTCTTTCCAGTCTtatatttaaagtcatttatatTCTTCTCCACAAGCCTTAAGATGCCTTTCTCTGCCTCATCACAGGCGTTCTGGAGCTGTTGTCGCTCATGCTCAAATTCTGGCTTATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020659 lncRNA downstream 115816 13857672 ~ 13860564 (-) True XLOC_010530
TCONS_00020658 lncRNA downstream 116117 13857672 ~ 13860263 (-) False XLOC_010530
TCONS_00022131 lncRNA downstream 117068 13858907 ~ 13859312 (-) True XLOC_010531
TCONS_00020643 lncRNA downstream 412105 13556921 ~ 13564275 (-) True XLOC_010521
TCONS_00021788 lncRNA downstream 425053 13545293 ~ 13551327 (-) True XLOC_010520
TCONS_00022133 lncRNA upstream 82722 14088331 ~ 14090702 (-) True XLOC_010539
TCONS_00020668 lncRNA upstream 88172 14093781 ~ 14167673 (-) True XLOC_010540
TCONS_00020675 lncRNA upstream 410737 14416346 ~ 14417407 (-) True XLOC_010544
TCONS_00020676 lncRNA upstream 416191 14421800 ~ 14428968 (-) False XLOC_010545
TCONS_00021789 lncRNA upstream 416545 14422154 ~ 14424198 (-) False XLOC_010545
TCONS_00020664 mRNA downstream 10862 13955586 ~ 13965518 (-) True XLOC_010534
TCONS_00020663 mRNA downstream 54791 13911692 ~ 13921589 (-) True XLOC_010533
TCONS_00020660 mRNA downstream 95224 13875867 ~ 13881156 (-) False XLOC_010532
TCONS_00020662 mRNA downstream 95224 13876675 ~ 13881156 (-) True XLOC_010532
TCONS_00020661 mRNA downstream 95241 13876560 ~ 13881139 (-) False XLOC_010532
TCONS_00020667 mRNA upstream 58788 14064397 ~ 14074594 (-) True XLOC_010538
TCONS_00020669 mRNA upstream 225797 14231406 ~ 14248892 (-) True XLOC_010541
TCONS_00020671 mRNA upstream 270755 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020670 mRNA upstream 270755 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020672 mRNA upstream 274887 14280496 ~ 14353567 (-) True XLOC_010542
TCONS_00020665 other downstream 17495 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 158440 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 305161 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 433920 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020613 other downstream 1481963 12474861 ~ 12494417 (-) False XLOC_010505
TCONS_00020674 other upstream 379711 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020689 other upstream 1807897 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 2567805 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 2672099 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 3114455 17120064 ~ 17120186 (-) True XLOC_010576