RNA id: TCONS_00020669


Basic Information

Item Value
RNA id TCONS_00020669
length 1769
RNA type mRNA
GC content 0.48
exon number 9
gene id XLOC_010541
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14231406 ~ 14248892 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGACCGACGCTCGGCCagcgctgctgctgctgttgctgtttGGGACACAGGCAGTCTCACAGAAAACATGGCGGAGGCTGCTGCGGTCCCTCCGCATCGCTTcttctgtcactgttgtaagggTGAAGTGAGTCCCAAACTACCGGAGTATATCTGTCCCAGATGTGACTCTGGCTTCATCGAGGAGGTTACAGAAGACTCCAGCCTTCTGGACAACAGTTCAAATGGCCTTGACGACACAAGTTCACAGTTTGCTGAGCTGTGGCAGCTGTTGTTCGTGGAGCGGCCGTTCGGTCTGGATCTGGACAGTCTTGACTCTGAGCGGCTTCCAGGAGGGGGCAGTGGGTCTGGGGGTTTCGGAGCAGGACCGTTTGGTGGGTCTGTCCCAGGTGGGCTCGGTGGGCCTCTGGGTGGACCTCTAAGTGGGGGAGAGCACTGGGGTCCAGGTCGTCCTCCTCGTCTGCACACTCAAAGGAGATACAGATCCAGAGGAAGCAGTCGACCGGATCGCTCGCCCGCTGTTGAGGGAATCGTACAGCAGTTTCTCGCAGGCCTTTTTGCCAATTCAGGAGTACCAGGCTCTCCTCCAGTGTCATGGACGAGCATGCTGCACTCAAACCCCGGGGACTATGCGTGGGGCCAGGGCGGTCTGGATGCAGTCATCACACAGTTATTGGGTCAGTTTGAGAACACTGGTCCTCCTCCTGCGGAGAAAGAGAAAATCTCCTCCCTTCCCACTGTTATCATCACTCAGGAACACACTGACTGCAATATGGAGTGTCCTGTATGTAAAGAAGACTATACAGTCGGTGAGCCGGTCCGGCAGCTGCCCTGTAACCACTTCTTCCATAGTGACTGCATCGTGCCCTGGCTAGAACTGCACGACACGTGTCCTGTGTGCAGGAAGAGTCTGAATGGGGATGAAAGCGGCACTCAGTCCTCATCAGAGCCTTCTTCTTTAAACACTGATCCTCGCACACCGGAGAGATGGTCCTTCTGAAACACATACACATGCGTCCGCCTGTCTCATCCAAACTCTCTGTCTTAACCCAAGATtgtttgtctttctctctctctccttttgtTGCGTTTTCATGGCACCACACTGATGTCTTTTACTATGATTTGTTTACTACTTTTCTCAACCGCAGTCCTTCTGGAGTTGTGTTCATCCCAATGTTTCTGTTTCTTTCCCATATTCTCAGGCGCCTTTGATTCCTTCTGTGCTTTTACTTTTTCCCTACCTGAGTGAACAAACACAGCGCAGGATGAGGCACGTTGATTTGGGCACATGTTGTTGCTAAAGCAGCTCAACTCTGAACCCACATTTAGTTTGTACAGCATTGGGAGCTGTACTCCGCGTAGCGCCTCTTAGCGTCCAATGTGAATTCTTCTTGGGATGGCCTGCCGTGTCTGTGCGGTTTATCAACTTTGCTTTACTTCCCCAGTCCTTGCCTTCTTATTTTCTCCTCCGTTTGTCCAGGAGATCATGAAGTTTTGTCTCTTTCTTCTCTTTGATTCCTCTCTGGTGTGTATATATCACAGACCCATCAACGTCCATCAGTTTAATTTGATTACCTTCTTTTCACTCTCATTTCTATTACAGTTTTttctaatgtaaataattttagttGGAAAACTCATTAAGGAAgacaaaaaaagaggaaaaaaaacattgatgatGAATCGCTAAatattaaagtatataaatatatattatatgatgtGTATGACCatgatgtattaataataaaactgaataaaaacca

Function

GO:

id name namespace
GO:0007368 determination of left/right symmetry biological_process
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061215-82 Predicted to enable metal ion binding activity. Acts upstream of or within determination of left/right symmetry. Is expressed in brain. Orthologous to human RNF115 (ring finger protein 115).

Ensembl:

ensembl_id ENSDART00000090329

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020668 lncRNA downstream 63733 14093781 ~ 14167673 (-) True XLOC_010540
TCONS_00022133 lncRNA downstream 140704 14088331 ~ 14090702 (-) True XLOC_010539
TCONS_00022132 lncRNA downstream 225797 13976380 ~ 14005609 (-) True XLOC_010536
TCONS_00020659 lncRNA downstream 370842 13857672 ~ 13860564 (-) True XLOC_010530
TCONS_00020658 lncRNA downstream 371143 13857672 ~ 13860263 (-) False XLOC_010530
TCONS_00020675 lncRNA upstream 167454 14416346 ~ 14417407 (-) True XLOC_010544
TCONS_00020676 lncRNA upstream 172908 14421800 ~ 14428968 (-) False XLOC_010545
TCONS_00021789 lncRNA upstream 173262 14422154 ~ 14424198 (-) False XLOC_010545
TCONS_00020677 lncRNA upstream 177557 14426449 ~ 14428968 (-) False XLOC_010545
TCONS_00021790 lncRNA upstream 177968 14426860 ~ 14433656 (-) False XLOC_010545
TCONS_00020667 mRNA downstream 156812 14064397 ~ 14074594 (-) True XLOC_010538
TCONS_00020666 mRNA downstream 238760 13987735 ~ 13992646 (-) True XLOC_010537
TCONS_00020664 mRNA downstream 265888 13955586 ~ 13965518 (-) True XLOC_010534
TCONS_00020663 mRNA downstream 309817 13911692 ~ 13921589 (-) True XLOC_010533
TCONS_00020662 mRNA downstream 350250 13876675 ~ 13881156 (-) True XLOC_010532
TCONS_00020671 mRNA upstream 27472 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020670 mRNA upstream 27472 14276364 ~ 14332561 (-) False XLOC_010542
TCONS_00020672 mRNA upstream 31604 14280496 ~ 14353567 (-) True XLOC_010542
TCONS_00020673 mRNA upstream 134587 14383479 ~ 14397003 (-) False XLOC_010543
TCONS_00020681 mRNA upstream 279482 14528374 ~ 14534724 (-) False XLOC_010546
TCONS_00020665 other downstream 272521 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 413466 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 560187 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 688946 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020613 other downstream 1736989 12474861 ~ 12494417 (-) False XLOC_010505
TCONS_00020674 other upstream 136428 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020689 other upstream 1564614 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 2324522 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 2428816 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 2871172 17120064 ~ 17120186 (-) True XLOC_010576

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_06048748_06054049.mRNA True 792 mRNA 0.54 6 CI01000016 6048740 ~ 6054049 (-)