RNA id: TCONS_00020672


Basic Information

Item Value
RNA id TCONS_00020672
length 4494
RNA type mRNA
GC content 0.47
exon number 31
gene id XLOC_010542
representative True

Chromosome Information

Item Value
chromosome id NC_007127.7
NCBI id CM002900.2
chromosome length 55266484
location 14276364 ~ 14353567 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTGCTCGTTTGCGACAAATGGATTTATCAGCGCGGGCTTTTTAACTAGCTACAGCAGGTGTTGGAGCCACGCAGACCTGCATTTCGGATTTATTTTGTATATGAGGGGAACGAGACGGAGTGTGAGAGCGGTGTGTGCGCGACAGGACTGCACAACGAGCGCGTGAGATCTAGCATGACGCTGAAGAAGCACATCTACACCTGAGAGAAGATGCGCCTGCACGCGCGCCTGCATAAATGAGCGCGCTTTATTTACAATCACTGATAAAAACCCAATTGAAGGAGAAAAAAAGAGACTGAAATTACATAACTGACCAATGGAGATTCACAAGTACCTGCTGCTATTCAAGATCACCATTCTACTTAAAGGGCTGTGTGAATGTTTTAATATTGATGTAAAGAGACCAAGGATCTTCAGTGGACCAGAAGATGCTTTGTTTGGTTTCTCTGTGTTGCAGCATGATGACAATGGAGAAAAATTactCCTAGTTGGTGCTCCATGGGATGGACCACAAAATAATAGGAAGGGAGATATTTACAAGTGCATTGTGGAAGATGAGAATTCCAATTGCTCCAAAGTTAATCTAGGTGAAAATGCATTTCAGAATGTGTCTCGAAAtcttaaaaactctcatttgGGGATGACCCTGACCCCTACTGATTCAGACGGCTTCCTGGCATGCGCTCCTCTGTGGTCCCAGGAATGTGGAACATCTCTGTTCAGCACAGGAATCTGTGCATCTGTCACCAGTGACATGGAGCCCAATGACGTCATTGCACCAACGGCACAGAgatGCACCACATACATGGACATAGTGATTGTTTTAGATGGCTCTAATAGCATCTACCCCTGGTATGAGGTGCAGAACTTCCTCAGCAACATACTCAGCAAGTTCCACATTAGCCCTGAGCAAATGCAGGTTGGTGTCTTGCAGTATGGGGAGATTTCGGTCCATGAGTGGTCTCTCAGGGACTATCAGACAACAGCAGATGTGGTTGAAGCCGCCAAGAACATCAGCCGCCAGGAGGGACGAGAGACCCGGACAGCCTACGCCATCCAAATGGCCTGCACGGAGGCCTTCAGTCCTGACAGAGGAGCGAGGGAAGGGGCCACTAAAGTGATGATAGTGGTGACCGATGGAGAGTCCCATGATGGCGAAGACCTTCCCGAGGCCCTGATTGAATGTGAGAAGCGTAACATCACCAGATATGCCATCGCTGTATTAGGTCACTACATCCGCAGACAGCAGGACCCAGAGACGTTCATCAATGAGATTAAGTACATCTCCAGTGACCCCGATGAGAAATACTTCTTCAATGTGACGGATGAGGCTGCTCTAAATGACATTGTAGATGCGTTGGGAGATCGCATATTTAGTCTAGAAGGCACTTTAGGATACAATGAAAGTGCCTTTCTTATGGAGATGTCTCAGATTGGGTTTTCAACACACATTTTGGATGATGGCATCTTGTTTGGCATGGTGGGAGCCTACGATTGGGAGGGAGGCATCCTGAAAGAAAGCAAAGAAGGGCAGCTTATGCCCCCACGAGAGGCCTTTGAGAAAGAGTTCCCACTGGAGCTCAAGAATCATGCAGCCTACCTAGGTTACACAGTGTCCTCAGTGGTTGTGGGGAACTGGAGGAGGCTGTACGTTGCTGGTGCACCCAGATTCAAGCACAAAGGAAAGGTCATCCTGTTTGACCTCACTCCTGAAGGGGATGTCATAATCACACAGGCCCTGAATGGAGAACAGATCGGCTCATATTTTGGCAGCGAGGTATGCGTGGTGGACGTGGATCAGGATGGAATAACAGATATCCTGCTTATAGCTGCTCCAATGTTTCTGGGAGCCGGAAACAAAGAAACAGGCAAAGTCTACGTCTTCTGTCTGGATGGGGATGGTTTTGCTCCCAACGGGACGCTGCATTCTCAGCAGAAGGCACAGGATGCACGCTTTGGTTATGCCATGGCTGTGGCCCCTGACCTCAACCATGATGGATACACTGATCTGCTCGTGGGAGCTCCGCTTGAGGATGACCACCAGGGAGCTCTTTACATCTACCATGGCGATGAATACTACATCATACCTCagtataaacaaCGTATCTCAGGCTCCTCTCTGTCCACGGGCCTGCGGTATTTTGGCCGTAGCCTGAGCGCTCTGCTGGATCTGGATGGGGATGAGTTACTGGATCTTGCTGTGGGAGCACAGGGCTCTGCTGTCCTTCTGAAGTCACGCAGTATCGTGCAGATCAACGTTAGCCTGTCCTTCCAGCCACACTCTATTAATGTGATTCAGAAGAACTGCCTCAGAGCTGGACGAGACTCCGCATGCCTTAATGCCACCGTTTGCTTCCTGGCCTTGTCTCGCTCTCCTGGCTCTCGTGGCACATATTTTGGTAAAGTGTCATATATGCAGGTGGGGGCCATGCTGGATGACAGAAAGATCTCAGCTCGTGCTTTGTTTGACTCCAACTCTCAGCGTCAGACCTTAATGAGCATCAGTGTTCGTGTTGGAGAGACCAAGTGCTACATCTTGCCATTTCACGTTTTTGATACAGCCGATTACATCCGACCGATCAGCTTCACTTTACGCTTCAAAATCAATGACACAGAAAGCGGCCCGGTACTTGACGAGGGCTGGCCAACAACACACAAGAAGTCTATCCCATTCTTCAAAGACTGTGGGGAGGATGATGTATGTGTAACCGATCTAGTTTTACAGGCCCATATGGACATTTCTGGAACAAGGCAGGTGCCGTACGTTATACGAAGTCCACGACGGCGGCTTGCGGTGGAAGTGCAGCTACAAAACAAGCTAGAAAATGCCTATAACACAAGTCTCACTCTTCATTACTCCAAAAACCTGCACTTCAGCACCTTGAGTATACGGGAAGATGCCCAGTTTAAGATTGAATGCACGGCTCTAGGCTCAAACAGTCACTCGTGTAATGTCAGCTATCCTGTGTTTCGCTCTCAGTCAAAGGTGAACTTCATGCTGGAATTTGAGTTCAGCTGTACGTCTCTCATCAGTAAAGTCCAGATGAGGCTCATTGCTTCCAGTGACAGTGTGGAGAGGGAAGGCACACTATCAGACAACACCGTTCAGTTGCAGAGTATTGTACAGTATGAGCCTGATCTCTTCATCACAAGTGACTCAAACCTAAACCGCTATGAGGTTCACCCGACCAGGACAGCATCAGAGGGGACGGGTCCCGAGTTCTACACGCATTTCAGGGTGCAGAATCTGGGCTGTTATGCTGTCAGCAATCTGGAGCTGAGCGTCAGTTTGCCTGCAGTGGCTTCAGGAGACCGGGTTTTCGCAGCTGTGGTTGATGCTTTCTCTCATAATGCTTCAGGTGTAAACTGCACTATAGTCAATGATATTTCTAAGCTCAAGTCCAGTCAGAGAGATGTCCGTCCACTTCATCCTGAAGATATGAAGAAAACTGAGCTAATGAACTGCAGTTCGTCATGGTGTGTGGAGGTGATGTGTCACATCCAGCAGCTGCTCAAGGGACAGACAGCCTTGATTCGCATCACTAGGAGGATACATGACAGCTTCTTCAGACAGGCCAAGTTCAAAGCAGTGACAATCGTAGGCTCCTACCAGCTTTCTGCTCGAGAGTCCAATCTGATTACAATGGGAAATGCTGCCCTCTTGAGGGAGACTACTCTGGAGGTGCTGAAGGGCCGTTCGATCCCGATCTCCCTGTGGATTCTGATTGGCAGCATCATTGGAGGACTGCTGCTTCTTGCACTTTTAGTATTCATCCTTTGGAAGTTGGGATTTTTCACAAGGAAACAGAGGAAGGACGAGGATGAAAACGATGACAACTGACACTGAAGCAAAGAATGAACAGAGTTTCCTCTTACGACCAGGAAATGTGACTTTTGCAGCCATTATTTCCCCTTTGAGACGTGACGCTTTTGTACAGGATTAAATATCAGATCCAGGTGGAATCTACACATTTCACTTTCTATGCTGATTTTTGGGGGAAAAACTGCAGAATGGATTTAAACCTCATTCAATATTTCACATGGAGCTAAGAGGACTTAAAATGTgccttaatatttaataaatatatgcacaaaatGCATAAAGCTTTGTGAATGATGGGTCATATCGGTTCTTGCAGGTCTGTCGAGTGCATTAAGTATCATGCTTGGCCAAGTCTCACTCTTAACATTTTTGGATTCTCTTGAGGCAAGATATGAGTAGCAATGCCTTTTACCAGGTTAATATGGGAGATTTTACATTTCACAGAGACAGATCAGAAACGCTTGCACTGCTTTGAAAAACAGGCAGAAAAGCAGAGAAATGCACTATTTGTGAAATAGAAAATAGTTTTGTATTTAAGATGAAAATGTGGTACAACACCAAGCGAtatgtttccttttttgttttaatgtccATTTCAGGTTTGTACACTGTTTTTGAGTTTTTGACATTCaaactaattattaaataaaacttttgtaagccataaata

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko05165 Human papillomavirus infection
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04515 Cell adhesion molecules

ZFIN:

id description
ZDB-GENE-100922-54 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Orthologous to human ITGA10 (integrin subunit alpha 10).

Ensembl:

ensembl_id ENSDART00000139859

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00020668 lncRNA downstream 112823 14093781 ~ 14167673 (-) True XLOC_010540
TCONS_00022133 lncRNA downstream 189794 14088331 ~ 14090702 (-) True XLOC_010539
TCONS_00022132 lncRNA downstream 274887 13976380 ~ 14005609 (-) True XLOC_010536
TCONS_00020659 lncRNA downstream 419932 13857672 ~ 13860564 (-) True XLOC_010530
TCONS_00020675 lncRNA upstream 62779 14416346 ~ 14417407 (-) True XLOC_010544
TCONS_00020676 lncRNA upstream 68233 14421800 ~ 14428968 (-) False XLOC_010545
TCONS_00021789 lncRNA upstream 68587 14422154 ~ 14424198 (-) False XLOC_010545
TCONS_00020677 lncRNA upstream 72882 14426449 ~ 14428968 (-) False XLOC_010545
TCONS_00021790 lncRNA upstream 73293 14426860 ~ 14433656 (-) False XLOC_010545
TCONS_00020669 mRNA downstream 31604 14231406 ~ 14248892 (-) True XLOC_010541
TCONS_00020667 mRNA downstream 205902 14064397 ~ 14074594 (-) True XLOC_010538
TCONS_00020666 mRNA downstream 287850 13987735 ~ 13992646 (-) True XLOC_010537
TCONS_00020664 mRNA downstream 314978 13955586 ~ 13965518 (-) True XLOC_010534
TCONS_00020663 mRNA downstream 358907 13911692 ~ 13921589 (-) True XLOC_010533
TCONS_00020673 mRNA upstream 29912 14383479 ~ 14397003 (-) False XLOC_010543
TCONS_00020681 mRNA upstream 174807 14528374 ~ 14534724 (-) False XLOC_010546
TCONS_00020682 mRNA upstream 174989 14528556 ~ 14552199 (-) True XLOC_010546
TCONS_00020683 mRNA upstream 218441 14572008 ~ 14587332 (-) True XLOC_010547
TCONS_00020684 mRNA upstream 698946 15052513 ~ 15097513 (-) True XLOC_010548
TCONS_00020665 other downstream 321611 13957756 ~ 13958885 (-) True XLOC_010535
TCONS_00020657 other downstream 462556 13813970 ~ 13817940 (-) True XLOC_010529
TCONS_00020651 other downstream 609277 13668166 ~ 13671219 (-) True XLOC_010526
TCONS_00020641 other downstream 738036 13522299 ~ 13542460 (-) False XLOC_010519
TCONS_00020613 other downstream 1786079 12474861 ~ 12494417 (-) False XLOC_010505
TCONS_00020674 other upstream 31753 14385320 ~ 14396699 (-) True XLOC_010543
TCONS_00020689 other upstream 1459939 15813506 ~ 15814501 (-) True XLOC_010554
TCONS_00020706 other upstream 2219847 16573414 ~ 16573530 (-) True XLOC_010567
TCONS_00020716 other upstream 2324141 16677708 ~ 16692267 (-) True XLOC_010571
TCONS_00020722 other upstream 2766497 17120064 ~ 17120186 (-) True XLOC_010576

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000016_06069691_06109173.mRNA True 4114 mRNA 0.47 31 CI01000016 6069290 ~ 6109173 (-)