RNA id: CI01180000_02574027_02588521.mRNA



Basic Information


Item Value
RNA id CI01180000_02574027_02588521.mRNA
length 2126
RNA type mRNA
GC content 0.52
exon number 14
gene id CI01180000_02574027_02588521
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2574027 ~ 2588824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GAGCCAAACTCTGTTTTATTTGGATCTTTTGAGGTCATCGCTCATGACCTCATGCGGAGCAGGAGTCAGTCTGACCTCTACCGCCTCAGAATCATCAGGAACTGTCATGATCTGGGATTTGAGTCTTCATCTCCGTACTGTGAACAGCTTCTGAGCTTTACACACGTTCCTGAGGATGAACAGATGTGGAGCCGCAGAGCTGTCATGACTCAGAGCGACGTGACGGACGAGTCGCCGTTCACTGAAGGTGATCTGTGTGGAAGGACAATGACCGGTCGCTGGTTGGCGAAGGCCGATGTGTGTCTCAGTATGAACCTGTTTCAGCCTGCTAAAGTCCTGCTGAATCACACACACCTGATAGCCGAGGAACTTGGTGATCAGACGTCATTGGCTAAGAGTTTACACCTCCTGGCTGTTCTGGCCAATCAGGAGCAGAGATACGGTGAGGCTCTTGATCTGTGTCAGCGAGCTCAGGAGATCGGAGGAGATGAGGAGTTCTGCTACCTGCTCGTTCAGACGCTGCTAACAGCTGTAGTGGGACAGGAAGGACAGGACACACATCATCAGGTGTGTGAGATCACTGAACAGGCCTGCAGAACCATCAGAGCAGTTCTAGAGCAGAGACAGAACCGAGCTTCAGTCCTGCGCTTCTTCATCGCGTCGCTGGAGACCAGGGGGGCCATTTTACGCCAGCGTTTACTGAGTCCTGCCACTCCGCTGTGCTGTCTGAGTGATCCGGAGGTGGAGATGTTGAGCTCAGTGTGTGACACACTCAAACACGCTGCCTCCGAACTGCTGCAGCTGGGATACAGGACACAGGCCGCAGAGGCCACGCTGGAACACGCCAACACGCTGAGAATTCTGGCTGCTCATGCTTTGAGTGCAGAAGAGAAACAGCGCCACCTTCTGCATGCATTCGCCCTTATGAAGAAGGCTGTGTCTATTCAAGAGGAAGTCGTCACTAATGTCCTGAATGTTCTTCCACCTCATGAGTCCGGTTGGCGTAACCTCCCTGCGATGCGTGTGTGTGTGCGTCTGAGACTGGCTCTTGCCGATCTGGCCCTGTTCATGCTGGACATCCAGTGTGCCGAGCAGAAGAGGAAGTCCATCGACAGGGACAGGAAGTGCTCAGTGGAGAGGGCGGTGGAGGACTTCATCAGGAGCAGCTCTGATCTCACCGATCATGAAAGGGTGGTTCTGACGCACCTCACAGCTGTTAGTTCCCTCTCACTGGACTGTGTGGAGACTAGGGCTCGTTCCCTCGGCATGCTGGGAAGGTGCCTGAGAATATTAGCCCAGCAGAGAGACCCATTGTACCCGTCCACACTGTGGGACGAGCCCATCACGGACGAGGACAGGGCCGAGAGAGAGGAAAATGAGGATGATAATGAAGACGAACATGTAAAGATGACTGAAACTGAGAAGAAACGATATGCAGGCAAAAGTGCGGAGCTACAGAGCGAGCGGAGGGCAGCGCAGCTGCTGTTTGCTCAGGCCTGTGAAACTCTCAGTCAGTCTGTGAGTCTGAGTCTTCAGCACGACCTTCCTCATCTGCTTCCTCGCGTCTGCTCAGATCTGCTGGAGTGTCACGGCCAGTTTGACCTCGGCTCCTCTGGACAGTACCTCGCCCTGCTGCAGAGCGGTGTGTGCTGTGCTGAGATGCGCTCCGTCCTGCACGCAATCTGCTCTGGCGTCAGTGAGTCTCAGGTGTGTGCGCTGGTAAACCTGCGGGAGAAGTTGCTCTCTTCACAGGGTCACAGACCCGACGGCACGCTGACAGCAGTGAGTCGAGAGCTCGCCCGTCTCTCTAAGGTACTTCGCTGACAGCCTGATAATGATAGTGCACTGCAAACCCCCTTAGACCGTATTCTGCCAGTCACAGTAGATATTCCCTTCACTTTCTATTCCTATGCATGAGAACAGGCCTAGCATAGTATGCATGTCATTTTGTGCATATGCATGTCATATTTGGCTATGTAGTAAAGTTCAAGATTGCAATGAAAAAAACGGCAGCTGTGGTTGCCAGAATTTTACTGTAAACAATAGCAACATTTTAAGTTTTACAGATTGAACTTTCTTAGGCAAGTACACTGTAAGTACTGTAAAATAAAGTGCAACCGAAAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU800968 lncRNA upstream 1288 2572412 ~ 2572739 (+) True G680148
TU800066 lncRNA upstream 131456 2442275 ~ 2442571 (+) True G679346
TU799735 lncRNA upstream 332154 2238490 ~ 2241873 (+) True G679047
TU799915 lncRNA upstream 359093 2210789 ~ 2214934 (+) True G679218
TU799925 lncRNA upstream 372592 2197189 ~ 2201435 (+) True G679228
TU801002 lncRNA downstream 46951 2635775 ~ 2664245 (+) True G680180
TU801038 lncRNA downstream 94410 2683234 ~ 2683580 (+) True G680204
TU801020 lncRNA downstream 104673 2693497 ~ 2695436 (+) False G680192
TU801065 lncRNA downstream 149893 2738717 ~ 2739535 (+) True G680227
TU801078 lncRNA downstream 175198 2764022 ~ 2764255 (+) True G680239
CI01180000_02541296_02567509.mRNA mRNA upstream 6244 2541296 ~ 2567783 (+) True CI01180000_02541296_02567509
CI01180000_02362001_02362428.mRNA mRNA upstream 210497 2361960 ~ 2363530 (+) True CI01180000_02362001_02362428
CI01180000_02322594_02323609.mRNA mRNA upstream 250275 2320352 ~ 2323752 (+) True CI01180000_02322594_02323609
CI01180000_02158036_02158965.mRNA mRNA upstream 414805 2157350 ~ 2159222 (+) True CI01180000_02158036_02158965
CI01180000_01942458_01949580.mRNA mRNA upstream 623380 1942127 ~ 1950647 (+) True CI01180000_01942458_01949580
CI01180000_02613130_02639905.mRNA mRNA downstream 23454 2612278 ~ 2639922 (+) True CI01180000_02613130_02639905
CI01180000_02690045_02691641.mRNA mRNA downstream 100447 2689271 ~ 2692183 (+) False CI01180000_02690045_02691641
CI01180000_02951792_02968343.mRNA mRNA downstream 362968 2951792 ~ 2968343 (+) True CI01180000_02951792_02968343
CI01180000_02998131_03010201.mRNA mRNA downstream 409307 2998131 ~ 3010503 (+) True CI01180000_02998131_03010201
CI01180000_03077007_03078238.mRNA mRNA downstream 487783 3076607 ~ 3078799 (+) True CI01180000_03077007_03078238
TU800043 other upstream 176667 2388867 ~ 2397360 (+) True G679324
TU799769 other upstream 774594 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 1017876 1518353 ~ 1556151 (+) True G678946
TU799296 other upstream 1418355 1149551 ~ 1155672 (+) True G678637
TU799410 other upstream 1507936 1059843 ~ 1066091 (+) True G678751
TU801024 other downstream 100938 2693355 ~ 2694234 (+) True G680192
TU801022 other downstream 105583 2694407 ~ 2695436 (+) True G680192
TU801631 other downstream 964453 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 964738 3553562 ~ 3563250 (+) True G680723
TU801653 other downstream 1176867 3765691 ~ 3784441 (+) True G680736

Expression Profile