RNA id: CI01180000_02951792_02968343.mRNA



Basic Information


Item Value
RNA id CI01180000_02951792_02968343.mRNA
length 430
RNA type mRNA
GC content 0.50
exon number 5
gene id CI01180000_02951792_02968343
representative True

Chromosome Information


Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 2951792 ~ 2968343 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGTGTGCATCGTGCAGAAGCGGGACACGGAGAAGATGTACGCCATGAAGTACATGAACAAGCAGCAGTGCATTGAGCGCGACGAGGTCCGGAACGTCTTTAGAGAGCTTGAGATCCTACAGGAGATTGAACATGTGTTTTTAGTAAACCTCTGTAGTACAGGCCTCATTTTTATGTATTACCGGTACTCGTTCCAGGATGAGGAGGACATGTTCATGGTTGTGGACCTTCTGTTAGGAGGAGACCTGCGCTACCATCTGCAGCAGAACGTGCCGTTCACAGAGGAGGCAGTGAAGCTGTACCGGGACATCAAACCTGACAACATCCTCCTGGACGAGCAAGGTCACGCACATTTAACAGACTTTAACATCGCTACGATAATCAAGGACGGTGAACGGGCCACGGCGTTAGCGGGAACAAAGCCTTACATG

Function


GO: NA

KEGG:

id description
K08793 STK32, YANK; serine/threonine kinase 32

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU801148 lncRNA upstream 47628 2903841 ~ 2904164 (+) True G680309
TU801147 lncRNA upstream 49123 2902448 ~ 2902669 (+) True G680308
TU801145 lncRNA upstream 55859 2895526 ~ 2895933 (+) True G680306
TU801143 lncRNA upstream 58353 2893159 ~ 2893439 (+) True G680304
TU801142 lncRNA upstream 61501 2889855 ~ 2890291 (+) True G680303
TU801181 lncRNA downstream 83206 3051549 ~ 3052025 (+) True G680331
TU801167 lncRNA downstream 155448 3123791 ~ 3179566 (+) True G680317
TU801278 lncRNA downstream 197145 3165488 ~ 3169456 (+) True G680424
TU801301 lncRNA downstream 244670 3213013 ~ 3280015 (+) True G680441
TU801606 lncRNA downstream 418884 3387227 ~ 3387686 (+) True G680705
CI01180000_02690045_02691641.mRNA mRNA upstream 259609 2689271 ~ 2692183 (+) False CI01180000_02690045_02691641
CI01180000_02613130_02639905.mRNA mRNA upstream 311870 2612278 ~ 2639922 (+) True CI01180000_02613130_02639905
CI01180000_02574027_02588521.mRNA mRNA upstream 362968 2574027 ~ 2588824 (+) True CI01180000_02574027_02588521
CI01180000_02541296_02567509.mRNA mRNA upstream 384009 2541296 ~ 2567783 (+) True CI01180000_02541296_02567509
CI01180000_02362001_02362428.mRNA mRNA upstream 588262 2361960 ~ 2363530 (+) True CI01180000_02362001_02362428
CI01180000_02998131_03010201.mRNA mRNA downstream 29788 2998131 ~ 3010503 (+) True CI01180000_02998131_03010201
CI01180000_03077007_03078238.mRNA mRNA downstream 108264 3076607 ~ 3078799 (+) True CI01180000_03077007_03078238
CI01180000_03149731_03154047.mRNA mRNA downstream 180704 3149047 ~ 3154088 (+) True CI01180000_03149731_03154047
CI01180000_03210894_03214195.mRNA mRNA downstream 242551 3210894 ~ 3214720 (+) True CI01180000_03210894_03214195
CI01180000_03223456_03224643.mRNA mRNA downstream 255059 3223402 ~ 3224643 (+) True CI01180000_03223456_03224643
TU801022 other upstream 256356 2694407 ~ 2695436 (+) True G680192
TU801024 other upstream 257558 2693355 ~ 2694234 (+) True G680192
TU800043 other upstream 554432 2388867 ~ 2397360 (+) True G679324
TU799769 other upstream 1152359 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 1395641 1518353 ~ 1556151 (+) True G678946
TU801631 other downstream 584934 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 585219 3553562 ~ 3563250 (+) True G680723
TU801653 other downstream 797348 3765691 ~ 3784441 (+) True G680736
TU802064 other downstream 1814962 4783305 ~ 4785631 (+) True G681137
TU802202 other downstream 2402067 5370410 ~ 5373762 (+) True G681268

Expression Profile