RNA id: TU801181


Basic Information

Item Value
RNA id TU801181
length 477
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G680331
representative True

Chromosome Information

Item Value
chromosome id CI01180000
NCBI id null
chromosome length 11503085
location 3051549 ~ 3052025 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGCAGCATTACATCTGGATTACTGTGACCTTTACTAAAGCAGAATATAAAAGCATCACGGTGTGAGAGAACAACAGTGAACAGACAGTGAGGATGAACTCACAGAGATTAAAACAAACGACAAATAAAACAACAATAATAAAAAAATACATGAAACGATTATATAAAAGCAGTTCTTAAAAACAATAAGCTTTAACGGCATTACAAAAGACACTGTAAAAAAAAAAAAAAAAAAAAAAACCCAGCAAATAAGTCCTTCATGTTCTAGGCACTTTTAGTATTAAAAGTCAGAATTGACCTGATGAAAACCACTGAGCGCGAAACAGTCCAGATGAGTTTCTGCTGCGGGACGGGAGAATAAAACCAACACTGGCTGTGTTAAAATCACAGAACCTTCATCATAAATACAAACATCTCAACCTCTGACTCCACGGCCCACAATAATATCTGCTGTAATGAAAAAGATTGGTTTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU801199 lncRNA upstream 83792 2966958 ~ 2967757 (+) True G680349
TU801148 lncRNA upstream 147385 2903841 ~ 2904164 (+) True G680309
TU801147 lncRNA upstream 148880 2902448 ~ 2902669 (+) True G680308
TU801145 lncRNA upstream 155616 2895526 ~ 2895933 (+) True G680306
TU801143 lncRNA upstream 158110 2893159 ~ 2893439 (+) True G680304
TU801167 lncRNA downstream 71766 3123791 ~ 3179566 (+) True G680317
TU801278 lncRNA downstream 113463 3165488 ~ 3169456 (+) True G680424
TU801301 lncRNA downstream 160988 3213013 ~ 3280015 (+) True G680441
TU801606 lncRNA downstream 335202 3387227 ~ 3387686 (+) True G680705
TU801607 lncRNA downstream 336263 3388288 ~ 3388573 (+) True G680706
CI01180000_02998131_03010201.mRNA mRNA upstream 41046 2998131 ~ 3010503 (+) True CI01180000_02998131_03010201
CI01180000_02951792_02968343.mRNA mRNA upstream 83206 2951792 ~ 2968343 (+) True CI01180000_02951792_02968343
CI01180000_02690045_02691641.mRNA mRNA upstream 359366 2689271 ~ 2692183 (+) False CI01180000_02690045_02691641
CI01180000_02613130_02639905.mRNA mRNA upstream 411627 2612278 ~ 2639922 (+) True CI01180000_02613130_02639905
CI01180000_02574027_02588521.mRNA mRNA upstream 462725 2574027 ~ 2588824 (+) True CI01180000_02574027_02588521
CI01180000_03077007_03078238.mRNA mRNA downstream 24582 3076607 ~ 3078799 (+) True CI01180000_03077007_03078238
CI01180000_03149731_03154047.mRNA mRNA downstream 97022 3149047 ~ 3154088 (+) True CI01180000_03149731_03154047
CI01180000_03210894_03214195.mRNA mRNA downstream 158869 3210894 ~ 3214720 (+) True CI01180000_03210894_03214195
CI01180000_03223456_03224643.mRNA mRNA downstream 171377 3223402 ~ 3224643 (+) True CI01180000_03223456_03224643
CI01180000_03250547_03255754.mRNA mRNA downstream 198522 3250547 ~ 3255868 (+) True CI01180000_03250547_03255754
TU801022 other upstream 356113 2694407 ~ 2695436 (+) True G680192
TU801024 other upstream 357315 2693355 ~ 2694234 (+) True G680192
TU800043 other upstream 654189 2388867 ~ 2397360 (+) True G679324
TU799769 other upstream 1252116 1795170 ~ 1799433 (+) True G679076
TU799630 other upstream 1495398 1518353 ~ 1556151 (+) True G678946
TU801631 other downstream 501252 3553277 ~ 3563250 (+) False G680723
TU801630 other downstream 501537 3553562 ~ 3563250 (+) True G680723
TU801653 other downstream 713666 3765691 ~ 3784441 (+) True G680736
TU802064 other downstream 1731280 4783305 ~ 4785631 (+) True G681137
TU802202 other downstream 2318385 5370410 ~ 5373762 (+) True G681268

Expression Profile