RNA id: TCONS_00001933


Basic Information

Item Value
RNA id TCONS_00001933
length 4807
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_001208
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22481723 ~ 22512136 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTCTCATTAATGACACTTGCTTAAAGACGCGCGTGGAGAAGGATGCGCGCGCCCAGGGGGAGGGACGAAACCAAATCCGCCTCACGCGCTTTCTGCTCGCGCAGAGCTCAACTCAGGCGCACCAACGGGACCCAAAAACATATTTTCTACAGTTTGTTCCTTCTTGATTCGTACACGAATTTGCTACTTTGTTTTGGAAAGGGAGACGGTCTCCCTACCTGCGACGTCCGATGAATTCTGCGGGGAGAGTcactttgttttttcttttaattgccCTGATAACGCAAGATTGTTTCTCGTCTAAAGGAGAAGACAGGCTCTTTCGTCGTTTATTCAGGAGGTATAATCAGTTCATTCGGCCAGTGGAAAATGTGTCTGACCCTGTTACTGTGGAGTTTGAGGTCTCCATCTCACAGCTTGTTAAAGTGATATGGAATGACTACAAGCTGAAGTGGTCACCAGCAGAGTTTGATGGAATTGAGTTCATCAGAGTCCCATCCAATAAAATCTGGAGGCCTGACATTGTACTTTACAACAATGCTGTTGGGGACTTCCTGGTGGAGGACAAAACCAAAGCCCTTTTGAAATTTGATGGAACCATCACTTGGGTCCCACCTGCAATTTTCAAATCTTCCTGCCCTATGGACATCACTTACTTTCCTTTTGACTATCAGAACTGCTCTATGAAGTTTGGTTCCTGGACGTATGATAAGGCCAAAATTGACCTGGTTCTTATCGGCTCTAAGGTCAACCTTAAAGACTTCTGGGAAAGTGGAGAGTGGGAGATCATTGATGCACCGGGTTATAAGCATGACATCAAGTACAACTGCTGTGAAGAGATCTACCCAGATATAACCTACAGTTTTTATATACGCCGACTACCCCTCTTCTACACTATCAACCTTATAATCCCCTGCCTCCTCATCTCTTTTCTGACAGTACTGGTTTTCTACCTTCCGTCAGACTGTGGCGAGAAGGTGACCTTGTGCATCTCTGTACTTCTATCTCTCACTGTGTTCCTTCTTGTCATTACGGAAACCATCCCATCTACTTCACTTGTGATCCCTCTGATTGGCGAGTACCTTCTCTTCACCATGATCTTCGTAACCCTCTCTATTGTTATCACTGTCTTTGTACTGAATGTGCACTATCGCACCCCTATGACCCACACTATGCCCAGCTGGGTCCGCACTGTCTTTCTTCGAGCTTTACCCCGCATCATGCTCATGCGCAGGCCTCTTGATCTATCAGAGTCCTCTGGAAAAGGAGGACTAGAaactgggggctcgtccgggacaGGAGCAGGGCGCGGAGGAGAGGGGAAGAAGAGAAAGAATAGTGGATCCCAACAGGGTGCAATGAACTCTCTGGAATTTGGAGAGGGGAAAGCAGCATTGGAAGGAAAGAAAGGAGGATGCCCATGTCATCCACTGAAAGAAGCAACTGAGGGAGATTGTGGGAAAGTCAGCCGTCAATTAAGTCCACAGGCTATTAATACAGTTGTGGCTTTCTCTGTCGTGTCACCGGAGATCAAACAGGCTATTGAAAGTGTGAAGTACATTGCTGAGAACATGAGGAGCCGCAACAAAGCTAAAGAGGTGGAGGATGATTGGAAGTATGTTGCCATGGTGATTGACCGCATCTTCCTCTGGGTCTttgtgctggtgtgtgtgttAGGAACTTTGGGCCTCTTCCTGCAACCTTTGATTGGCTTCCTCTCGTAATTAACTATGAAACACTAACCAACAATTTTCTGAGTCACTGACATGCTCCGTATTTATTAATGTCACATGTTCCGTCACTACATCAAGACTCTGATAATATAAACTATACACAGGTGCCCTTGTACAGCAAATATCCAATCAGTTTTCCTCTGCCACTAATCACTTGGATGGTTAAAGGCTGATTTTGGCCTTTTAACAATCATTGACTTTGAAACTTGACTATAAGTGAACCTTCCAATCACAACCCATCTTAAAGAACTGATGTCTATAAGAAGACTAATCAGGCTGATTGGTGTGTTCACTACTCAAATCTGACTTGCTAATCTAATTACACGGGTTTGTACCAAACAACATTGTCATCTCGCAGTCACTCAGGAAAATCTACTAACAGACAGCAAGGTTGATTCCTTAAAAGAGGatgaaaattaaatttaaacctAAAGAAATGTGTTGTGTAgacagtgttggggagtaactagttacatgtaatggcattacgtaatttaattacaaaataaaaataacagtaatttgttacagttactgagaaaaaaatgtgtaactacattacagttacttatgaaaatgttaaagattacaaatggagttacatctaaaaatattctttagaaatctgggatatgttgaataatattaatctgttcctttgcctgtttttgatatgcacgatgccttctgctaaggtcatttttttaaaactctgctattctgatgcttttgatAGACTTTCCGGTTTGATTGCGGCGCATCTAACATCTAACAGTTATGTTAATCCTCTTTGCCGCTGAAAGCATTAGGCTACTACAACCAGCCTTTTATCACATTAACTGTTTTGGGCAGTAGCTACGCCACAAGTAGtgatgctactagcttaactacatttctcagtagtgtggcagtagcgtcgctactttataaatcaaatagcttttcagtagcgaagctattgtattagtgaagtagcgcagtagcgcccacacaagctacatttaccgatccgAATCAATACTTGATGTGAGGCTGATGTTTAgccaatgaaagtaaatccatatgaggGATaacgatttcttcttcttcctgttttacggttgACAACAAACGttttggtgcattactgccacctcttGCTCTGGTCGGTGACGTCGCCAACCAATTAGACTAACACGCTaaatttgcttgatggaaagatgactgaggaaCAGGAGgtctaaataaatagtttactgtagtaaaggatAATATGTACTATGGTAATTACGGTaagttcatgatagttactaatgatactacattatgtagtgtagTTTATTAAGATAGAgtcgtaaatatatatacaatataatactcTTTCCTAAATATTTcgctttactataaattactacagtattttaaatgtgtaacacatGCTTTTATTGGATTTTTGGTTTTGCTGTTATATATTGTATAGTTTGTTgctgtttggtacagcatattatttgcagtaaataactgaactgaataaTTATGCCTCACATGTTTCATTGatagttttattgatcactaagatgtgattgacttggatttaagttgctttgatttagaaatgaaaattgcaaaactagcttagatgtttttttttattgcaaatgacACAAAAATTACCCTGCACAACtaactaaaattttgttttttaacaacagTAAACACTTTTTATGGTTATAAGGTCGGATTTTGTGGTGGCTggactttaaaattaaaataatataatcttAATTCATGTGTTGAAAGATTttgaaattttaacagtaaacagagctactcttaaggtcacacctgcttggtacaaatgcttgaaaatgatttagttgaaaatatccattagaaacataaaagtaattaaaaagtaTGTAATTAgttcatttacttttaaaaagtaattgagAAGGTACActgcttattacattttaaatagggtaatttgtaatctgtaatctattacatttccaaagtaacctccccaacactgtgtgtagattagttcacccaaatctgAGGATAAAAGTGAGCCGTGTAATTATGGGATGGAATTATTCCAGATTATGGGTGATCTAAAAATAAGTTTGAGTTGTAGCATGGCTGCATTCTAGAACAAAATGACTAATCAGGTCCCATTTATGCCAAATAATTTGTTTAGAATGAGATTAATTAATGTTCCCCCCTCTTAGTGTGTCTCATACCAATTGCCTGGTGATTTTGTTTCTCATTTGAAGCAGATGTATTGACCATGATGTTTAAATCCTTAACTGTTTTTTGGGGCTGTGCAGGCTATTAAAATGACTGCTTTCCCTCCCTTTCTTACactcatactctctctctctctctctccatcagaGACATAATCCCCTCTTTAATATCACCATTTCAATTTTTTCCCACTTCCACTTGTCAGCTTCTGAcactttttgtaaaatatttttaaacagatgtctttcaaataaaaataagttctttttgTTGTACGCACTATCCTCTCTCTGTCTTACTGCCTGTGTGTTGAACTCAGCAAGCAGCGAGTGTGTTCGTGTGGCGTGTGTCTGTGAAACGCTCATGCTTATCTTGGCTTGGCTGGTACAGCAGAGGTTGAAAGTGCCTCTGGTTTTATGATTGGTTTTAGTAGTATTAGGCCTTTTGAAGTAACAGCTTTCTATAATCATTTCCTAAGTATAAAAGCGGTTTCAGAACTATCTGAATTAACTCTTGCAAAGACATAATCCTCTACAACTGTTTACGGGGTGTGGAATTTACAGGCTTTGCAATTTTATTGCCACGTTGTACAGTAATCTAAGGTGAACAATGATTTAAAGAGGAATATATgctatgtttatatattatgtgttcatatacagttgaagtcagattaacCCTCctaaattattcgccccctgtacattttttttaacggaatttgtttaacggaaagaatattttttttcaactcattttttaaacagttttaataactcatatttctaataactgaattatttcatgatgacaggaaataatattttactacaaatat

Function

GO:

id name namespace
GO:0042391 regulation of membrane potential biological_process
GO:0050877 nervous system process biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0006811 ion transport biological_process
GO:0007165 signal transduction biological_process
GO:0043005 neuron projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022848 acetylcholine-gated cation-selective channel activity molecular_function
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0005230 extracellular ligand-gated ion channel activity molecular_function
GO:0030594 neurotransmitter receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04725 Cholinergic synapse
ko05033 Nicotine addiction
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-090312-91 Predicted to enable neurotransmitter receptor activity. Predicted to be involved in several processes, including chemical synaptic transmission; ion transmembrane transport; and regulation of membrane potential. Predicted to act upstream of or within ion transport. Predicted to be located in postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in immature eye and nervous system. Orthologous to human CHRNA6 (cholinergic receptor nicotinic alpha 6 subunit).

Ensembl:

ensembl_id ENSDART00000190987

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003411 lncRNA downstream 480673 21999781 ~ 22001050 (-) True XLOC_001204
TCONS_00001926 lncRNA downstream 599955 21880255 ~ 21881768 (-) True XLOC_001201
TCONS_00003410 lncRNA downstream 758363 21721834 ~ 21723360 (-) True XLOC_001200
TCONS_00001920 lncRNA downstream 923310 21556544 ~ 21558413 (-) True XLOC_001196
TCONS_00001908 lncRNA downstream 1160288 21320823 ~ 21321435 (-) True XLOC_001192
TCONS_00001938 lncRNA upstream 139443 22651579 ~ 22652026 (-) True XLOC_001210
TCONS_00001950 lncRNA upstream 333153 22845289 ~ 22851419 (-) True XLOC_001217
TCONS_00001960 lncRNA upstream 755208 23267344 ~ 23268528 (-) False XLOC_001220
TCONS_00001966 lncRNA upstream 757723 23269859 ~ 23274040 (-) False XLOC_001220
TCONS_00001967 lncRNA upstream 758752 23270888 ~ 23271791 (-) True XLOC_001220
TCONS_00001932 mRNA downstream 69681 22388799 ~ 22412042 (-) True XLOC_001207
TCONS_00001931 mRNA downstream 111063 22283626 ~ 22370660 (-) True XLOC_001206
TCONS_00001930 mRNA downstream 143202 22236489 ~ 22338521 (-) False XLOC_001206
TCONS_00001928 mRNA downstream 572115 21904955 ~ 21909608 (-) True XLOC_001203
TCONS_00001927 mRNA downstream 580134 21893289 ~ 21901589 (-) True XLOC_001202
TCONS_00001935 mRNA upstream 30321 22542457 ~ 22594338 (-) False XLOC_001209
TCONS_00001936 mRNA upstream 34823 22546959 ~ 22567140 (-) True XLOC_001209
TCONS_00001937 mRNA upstream 135620 22647756 ~ 22652424 (-) False XLOC_001210
TCONS_00001940 mRNA upstream 165293 22677429 ~ 22678471 (-) True XLOC_001212
TCONS_00001941 mRNA upstream 173825 22685961 ~ 22687913 (-) False XLOC_001213
TCONS_00001929 other downstream 289656 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001923 other downstream 801245 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001916 other downstream 954352 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001899 other downstream 1468509 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001897 other downstream 1468881 21010689 ~ 21012842 (-) False XLOC_001189
TCONS_00001939 other upstream 151587 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001973 other upstream 810866 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001976 other upstream 827828 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001977 other upstream 828835 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001997 other upstream 2313011 24825147 ~ 24825263 (-) True XLOC_001235

Expression Profile

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