RNA id: TCONS_00001931


Basic Information

Item Value
RNA id TCONS_00001931
length 423
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_001206
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 22236489 ~ 22370660 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGACTAAAGTTTCGTCGGCTTGTGTGTATAAGGACAACTTCACAGTACAGGAATGATGCAGAAGCAAAAATGTTTTGGAATTCTACATCTTGGAATTTTTATATGGACGTCATTTTGTATTAAAGGCTCTTTACAGGGGGAATATCAGCGGAAGTTGTATAAGGAGTTGATGGAGAACTATAACAGACTGGAAAGGCCTGTTCTCAATGATTCTGCACCCATAGTGGTGGAGCTGGGACTCACACTGCTTCAAATCATAGATGTGGATGAAAAAAATCAGGTATTAATAACCAACGCCTGGCTACAGCTGGGATGGACAGATGTCTATCTGAGCTGGAACCCGGATAACTATCCTGGTGTCCAGACCCTCCGGTTCCCATCCAATCAGATTTGGACACCAGATATTCTGCTGTACAACAG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000127506

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003411 lncRNA downstream 282576 21999781 ~ 22001050 (-) True XLOC_001204
TCONS_00001926 lncRNA downstream 401858 21880255 ~ 21881768 (-) True XLOC_001201
TCONS_00003410 lncRNA downstream 560266 21721834 ~ 21723360 (-) True XLOC_001200
TCONS_00001920 lncRNA downstream 725213 21556544 ~ 21558413 (-) True XLOC_001196
TCONS_00001908 lncRNA downstream 962191 21320823 ~ 21321435 (-) True XLOC_001192
TCONS_00001938 lncRNA upstream 280919 22651579 ~ 22652026 (-) True XLOC_001210
TCONS_00001950 lncRNA upstream 474629 22845289 ~ 22851419 (-) True XLOC_001217
TCONS_00001960 lncRNA upstream 896684 23267344 ~ 23268528 (-) False XLOC_001220
TCONS_00001966 lncRNA upstream 899199 23269859 ~ 23274040 (-) False XLOC_001220
TCONS_00001967 lncRNA upstream 900228 23270888 ~ 23271791 (-) True XLOC_001220
TCONS_00001928 mRNA downstream 374018 21904955 ~ 21909608 (-) True XLOC_001203
TCONS_00001927 mRNA downstream 382037 21893289 ~ 21901589 (-) True XLOC_001202
TCONS_00001925 mRNA downstream 401808 21861387 ~ 21881818 (-) False XLOC_001201
TCONS_00001924 mRNA downstream 560297 21721651 ~ 21723329 (-) False XLOC_001200
TCONS_00001922 mRNA downstream 569601 21610471 ~ 21714025 (-) True XLOC_001198
TCONS_00001932 mRNA upstream 18139 22388799 ~ 22412042 (-) True XLOC_001207
TCONS_00001933 mRNA upstream 111063 22481723 ~ 22512136 (-) False XLOC_001208
TCONS_00001934 mRNA upstream 113905 22484565 ~ 22512063 (-) True XLOC_001208
TCONS_00001935 mRNA upstream 171797 22542457 ~ 22594338 (-) False XLOC_001209
TCONS_00001936 mRNA upstream 176299 22546959 ~ 22567140 (-) True XLOC_001209
TCONS_00001929 other downstream 91559 22191952 ~ 22192067 (-) True XLOC_001205
TCONS_00001923 other downstream 603148 21680364 ~ 21680478 (-) True XLOC_001199
TCONS_00001916 other downstream 756255 21526672 ~ 21527371 (-) False XLOC_001195
TCONS_00001899 other downstream 1270412 21011062 ~ 21013214 (-) True XLOC_001189
TCONS_00001897 other downstream 1270784 21010689 ~ 21012842 (-) False XLOC_001189
TCONS_00001939 other upstream 293063 22663723 ~ 22674613 (-) True XLOC_001211
TCONS_00001973 other upstream 952342 23323002 ~ 23330066 (-) False XLOC_001223
TCONS_00001976 other upstream 969304 23339964 ~ 23340503 (-) False XLOC_001223
TCONS_00001977 other upstream 970311 23340971 ~ 23341690 (-) False XLOC_001223
TCONS_00001997 other upstream 2454487 24825147 ~ 24825263 (-) True XLOC_001235

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_08362799_08373727.mRNA True 636 mRNA 0.40 3 CI01000300 8362517 ~ 8373727 (-)