RNA id: TCONS_00025303


Basic Information

Item Value
RNA id TCONS_00025303
length 500
RNA type mRNA
GC content 0.39
exon number 4
gene id XLOC_012658
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 13235714 ~ 13293642 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ataaacaaaacagGTTCGCTGTATGACTCTAAGCAGTATGTTGAGGCTAACGAGATCGAGCCGTCTCTGCCCCAGAACACAGTGAAGGCTCTTTATGACTACAGGGCAATGCGTCCTGATGAGctcaccttttcaaaaggtgttTTGATCCATAATGTGACCAGGGACACAAATGGATGGTGGAAAGGAGACTATGGTGGAAAACTCCAGCACTATTTCCCTTCAAATTACGTAGAAGAAGTCCAATCTGATGCCAATTACCAGCCCGAAGAGGAAAATCCATTAGGTGAATTGTGTAAAGGCACAGTGGACATCTCAAAGTGCACTGTTGGTAAGAGTACatcatttttatatgttttttaaatgaactttaaGACTTAGActtaattaacaattaattaaaggggtagttcgtCCCAAAAAgtaacttctgtcatcatttactctattGTTCCACACCTTTttgaatttcttctgttgaacacaaattaatataCAGT

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0009395 phospholipid catabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG:

id description
ko00562 Inositol phosphate metabolism
ko04012 ErbB signaling pathway
ko04014 Ras signaling pathway
ko04370 VEGF signaling pathway
ko04064 NF-kappa B signaling pathway
ko04066 HIF-1 signaling pathway
ko04020 Calcium signaling pathway
ko04070 Phosphatidylinositol signaling system
ko04072 Phospholipase D signaling pathway
ko04611 Platelet activation
ko04613 Neutrophil extracellular trap formation
ko04625 C-type lectin receptor signaling pathway
ko04650 Natural killer cell mediated cytotoxicity
ko04662 B cell receptor signaling pathway
ko04664 Fc epsilon RI signaling pathway
ko04666 Fc gamma R-mediated phagocytosis
ko04670 Leukocyte transendothelial migration
ko04062 Chemokine signaling pathway
ko04935 Growth hormone synthesis, secretion and action
ko04919 Thyroid hormone signaling pathway
ko04722 Neurotrophin signaling pathway
ko04750 Inflammatory mediator regulation of TRP channels
ko04360 Axon guidance
ko04380 Osteoclast differentiation
ko05200 Pathways in cancer
ko05206 MicroRNAs in cancer
ko05205 Proteoglycans in cancer
ko05225 Hepatocellular carcinoma
ko05214 Glioma
ko05223 Non-small cell lung cancer
ko05170 Human immunodeficiency virus 1 infection
ko05171 Coronavirus disease - COVID-19
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05169 Epstein-Barr virus infection
ko05110 Vibrio cholerae infection
ko05120 Epithelial cell signaling in Helicobacter pylori infection
ko05131 Shigellosis
ko04933 AGE-RAGE signaling pathway in diabetic complications
ko01521 EGFR tyrosine kinase inhibitor resistance
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-030131-9532 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to act upstream of or within intracellular signal transduction and phospholipid catabolic process. Human ortholog(s) of this gene implicated in familial cold autoinflammatory syndrome 3. Orthologous to human PLCG2 (phospholipase C gamma 2).

Ensembl:

ensembl_id ENSDART00000148127

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027068 lncRNA upstream 115981 13133657 ~ 13159754 (+) True XLOC_012654
TCONS_00026875 lncRNA upstream 333715 12941800 ~ 12942020 (+) True XLOC_012652
TCONS_00027067 lncRNA upstream 621090 12580449 ~ 12654645 (+) True XLOC_012650
TCONS_00027066 lncRNA upstream 813225 12452154 ~ 12462510 (+) True XLOC_012649
TCONS_00027065 lncRNA upstream 912909 12360479 ~ 12362826 (+) True XLOC_012648
TCONS_00026876 lncRNA downstream 214181 13494240 ~ 13515153 (+) False XLOC_012662
TCONS_00027069 lncRNA downstream 214186 13494245 ~ 13515308 (+) True XLOC_012662
TCONS_00027070 lncRNA downstream 954310 14234369 ~ 14239459 (+) True XLOC_012665
TCONS_00025327 lncRNA downstream 1365665 14645724 ~ 14647889 (+) False XLOC_012672
TCONS_00025328 lncRNA downstream 1367861 14647920 ~ 14649295 (+) False XLOC_012672
TCONS_00025300 mRNA upstream 26198 13235714 ~ 13249537 (+) False XLOC_012658
TCONS_00025301 mRNA upstream 29960 13236255 ~ 13245775 (+) False XLOC_012658
TCONS_00025299 mRNA upstream 59063 13203831 ~ 13216672 (+) True XLOC_012657
TCONS_00025298 mRNA upstream 81373 13182528 ~ 13194362 (+) True XLOC_012656
TCONS_00025296 mRNA upstream 96225 13162728 ~ 13179510 (+) False XLOC_012655
TCONS_00025304 mRNA downstream 20709 13300768 ~ 13307257 (+) True XLOC_012659
TCONS_00025305 mRNA downstream 29803 13309862 ~ 13313337 (+) True XLOC_012660
TCONS_00025306 mRNA downstream 35680 13315739 ~ 13321062 (+) True XLOC_012661
TCONS_00025307 mRNA downstream 512431 13792490 ~ 14132720 (+) False XLOC_012663
TCONS_00025308 mRNA downstream 557687 13837746 ~ 14134035 (+) True XLOC_012663
TCONS_00025284 other upstream 1444715 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 1818405 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025273 other upstream 2533572 10742049 ~ 10742163 (+) True XLOC_012635
TCONS_00025271 other upstream 2604997 10670661 ~ 10670738 (+) True XLOC_012633
TCONS_00025267 other upstream 3259109 10016508 ~ 10016626 (+) True XLOC_012628
TCONS_00025309 other downstream 668751 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025324 other downstream 1362812 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025333 other downstream 1709020 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025343 other downstream 2432370 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 2853625 16133684 ~ 16140348 (+) False XLOC_012697

Expression Profile

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