RNA id: TCONS_00026775


Basic Information

Item Value
RNA id TCONS_00026775
length 4113
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_013631
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 46171104 ~ 46183462 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctcactcacacacacgtaTCTCACCATGTCAACGGCGTTCAGGTCCTGCTTTATGCTCATCGGCTTCATTTTGGCGTACTTCACATATCTGTTATTGGGAGCGCTTGTTTTCTCAGCCATCGAGCGGCCCATCGAGGAGTCTCTGAAAGCGGACCTGAGCTCTCTGAAAGCCGAGTTCCTCAACCTGAGCTGCGTTAACAGCACGGCTCTGGAAACCTTCTTAGAAAGAGTTTTAAAAGCTAATAAATATGGCGTGTCGGTGCTTGAAAATGCTTCTCTTCGTACAAACTGGGATTTGGCGTCTTCTCTGTTCTTTGCCAACACGATGGTGACGACAGTGGGATATGGCCACACGACGCCACTCTCAGACGCCGGTAAAGCCTTCTCCATCGTGTACGCTCTGATCGGCGTCCCGTTCACCATGCTGGTGCTGACAGCGTGTGTGCAGCGCCTCATGCACCCGCTGACCTACAGGCCGATCTCCGCATGCCAGCGGCGGGCCGGTCTGCAGCAACGGTCAGCCAGCGTGGTGCACTTCATCGTCCTGCTGTTTCTGGTGGTGCTCTGCTTCTTCGTGGTGCCGTCGCTGGTGTTCAGCGCCATTGAAGAGACCTGGTCTTTCCTGGATGCCTTCTACTTCTGCTTCATCTCTCTCTGCACTATAGGACTCGGGGACTTTGTGCCTGCGGAAAAACCAGGACAGAGTCTCAGAGCTTTGTACAAGATATCAGTCATGGTCTACCTGTTTGTGGGATTGATGGTGATGTTCCTGGTCCTCCGCACATTTCACAAGCTTGCTGATGTTTACGGCTGGACGGCTTTCTTCCACCTGCCGAGCTGCGAGGAAGACGAGGAGGATAAAGAGCCAATAATAGAAGCAGGGCCTGAAGACGATTCGCCGGAGGCTGAGAAGGCCTCAATTAAGCCTCTGGATCCCAGCTCGCAAGTCTCCTACAACTCCATAAATAGATAAAACACCACATCCCTCCACAGTCACATAAGGACAGTGAATTGTAATTTGTGTGGACATGAAACATCAACACATTGCAGGTTAGCAGGGGCTTCAATGTGCAATAAGGCAAACCTTTACTTCACACACTCAGAAAGAAAGGTACaagatctgtcactggggtggtaccttctTAAAGGGGCATTTTTGTACCATACAAgtggacattagtacctttaAGGTACACATTTGTCCCTTAAGGGTTCACTTTTATACCTCTAAGGTAGtctttcccaaccctgttcctgaaggcacacaaACAGTACACATTTTAACCTCTTCCTATTTAAAAACACCTTAATCAACTCCTCAGAACATCAGAAGAGCCTTCAAACGGCTCAGATAACACATCCAAaacatgtactgttggtgtgcctccaggaacagggttgctataaaccagtgtttcccaaccctgttcctgattcaggtgtgtttgattagagagaggttgaaaatgtgtactgttggtgtgcctccagaaaCAAGGTTGGAAAACATTGCTctaaaccagtgtttcccaaccatgtTCCTAAAGACACACcgacagtacacatttttaacctcttcctattcaaacacacctgaatcaactcatccgAACATTAAAAGAGACTCCcaaacctgaagttaatgggtcagataagaaGACATCCAATTTCTGTAGTGtcggtgtgcctccaggaacagggttgggaaacactgctctaggGTACTTTGAGGtactagggttgtcacaatactgggaTTCGGTGCCAATCAATActgatttttaaaagcattaatttcctgctaacatttgagcgcgttCTTTAATGGCgatgattggccattgtgttcacgtgctcaacagaagtgACTCTGATTGGACAATGGATCATTTTAAAACCGCGATTCATCAGCGGACCGCTCGTATGTCGGCTTATAAACAAAgcagctgatcgacgtgactttaaaacactccagtgttccTGTGTCTGTGGCTACAGCtatgagttcggtgaactgatgaccttcacaaccaatcacagtcatttctgttgagcatgtgaacacaatggccaatcagcactgtttaagaacgtgcttaaCATCGCTCACATTTTTGCGGCAAATGAATGGGCTTTTTTGAATATCGGTGCTGATTGGTGTTAAATTCCAGTACCGTGACAACCCTATGTGGTACACGTTTGTACTTTTCAAGTATTAATGTGTATCTTTTAAGGACCAGAAATGTAGTCTTTGAAAAGGTACtgctagggttgtcacgatactggaatttggtaccaatcggtaatgaaattttaaaaacgtcaatTTCCCGCCAACATTTGAACGCTGttaagcacgttcttaaacagcactgattggctattgtgttcacatgctcaacagaaatgactgtgattggccgcgaaggtcatcagttcaccagtTTGTCTATAACCTGACATAAGCTGACAtataaaacgctccagtgtccccgtgtctgtggttacactcagtaaacagtggtgagttcggtgaaccgatgaccttcacAACCAATCAGTCATTTCAAGTTTagtgtgaacacaatggcaaatcagcgctgtttaagaacgtgctcaacagcgctgAAATCTTAGTGGGGAATGGACATGTTTAAAATTTCAGCATCGATTAgtactgaattccagtatcgtgacaaccctatgAAGTACACGTTTCTACTGTTTAGGTGTTTATGTATCTTTAAAGaccaaaaatgtcacttttggGAAGGTACTGCttgggttgtcacgatactggaattggATACCAATCGatgctgaaattttaaaaacgtttcctgctaacatttgagcgctgttgagggcatttttaaacagtgctgattggccgttgtgttcacatgctcaacagaaatgacagtgATTGGGCGTGAAGGTCATCaattcaccgaactcaccgctgtttactgatgATAACCACAGACACAGGgacactgaagtgtttcaaagTCTCGTCCATCATCTGAtttgtttataagctgacataagAGCGATCCGCCAATCAATCGCAGCttcaaaacactccagtgtccccgTGTCTGTCGTTAcattcagtaaacagcggtgagtttggtgaactgatgaccttcacagccattcacagtcctttctgttgagcaccTGAACACAATgtcaaatcagcgctgtttaagaacacgatcatatgttagtgggaaatgaacattattaaaatgtcaGTATCGATCAgtactgaattccagtatcaGGACAACACTATATGGTACACGTTTGTACTTTTAATGTGTTGATATGCATctttaaggtctgaaaatgtaCTTATTCAAAAGTTACTGCTAGGGATGTCACGATATTGGAATTTGGTTAccgatattttaaaaatgtccatttcccgctaacatttgagcgctgctgagcaagttcttaaacagcgctgatttgacATTGTTgtcatgctcaacagaaatgactgtgattggctgtgaaggtcatcagttcaccggtttgtctataagctgacatacgagcgatccacTGATAAATCacagctttaaaacactccagtgtccctctatctgtgtttacactcagtaaacagcggtgagttcgctgaactgatgaccttcacggcaaatcagtcatttctgttgagcacgtgaacacaatagcCAATCAACCGTTCAAGAacacgctcaaatgttagcaggaaatggatgttttttaaatttcagtactgaTCGGTAGCAAATTCCAGTatatttgtacctttatttctgagggtGCAGATGTATTCTGTTTTTTAGAAAATCCTCTTTGTGGATGAAGTAGTTTCATGAACCAAATATTGTTCAGTTTGAAGTGAGCAATTGTGAACTTCAAGACTTGAAGGGATGTTATATTAAATGTTGTGCCTTTGCTTTAGGAAATGTTGCTCGTTAATTCTTAGCATGACAATTATTTAGGGTATGTAATTTGTAGGTTATTAAATGCATGGACCAACTGATCATTCTTGATAAATGTCTACAACTGTTATTTGTCAGTAAGAttgtcattaaagggatagttcaccaa

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030322 stabilization of membrane potential biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022841 potassium ion leak channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG:

id description
ko04040 Ion channels

ZFIN:

id description
ZDB-GENE-050309-213 Predicted to enable potassium ion leak channel activity. Predicted to be involved in potassium ion transmembrane transport and stabilization of membrane potential. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in notochord and yolk syncytial layer. Orthologous to human KCNK6 (potassium two pore domain channel subfamily K member 6).

Ensembl:

ensembl_id ENSDART00000021192

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027427 lncRNA downstream 186200 45983672 ~ 45984904 (-) True XLOC_013627
TCONS_00027426 lncRNA downstream 217852 45949801 ~ 45953252 (-) True XLOC_013626
TCONS_00027425 lncRNA downstream 281198 45883974 ~ 45889906 (-) True XLOC_013625
TCONS_00027418 lncRNA downstream 281305 45883974 ~ 45889799 (-) False XLOC_013625
TCONS_00027428 lncRNA upstream 70271 46253733 ~ 46255814 (-) False XLOC_013634
TCONS_00026781 lncRNA upstream 70271 46253733 ~ 46256560 (-) False XLOC_013634
TCONS_00027429 lncRNA upstream 70271 46253733 ~ 46257752 (-) False XLOC_013634
TCONS_00026782 lncRNA upstream 70271 46253733 ~ 46258715 (-) True XLOC_013634
TCONS_00026994 lncRNA upstream 419873 46603335 ~ 46604301 (-) True XLOC_013640
TCONS_00026773 mRNA downstream 35177 46099223 ~ 46135927 (-) False XLOC_013630
TCONS_00026774 mRNA downstream 35177 46118530 ~ 46135927 (-) True XLOC_013630
TCONS_00026772 mRNA downstream 107331 46056907 ~ 46063773 (-) True XLOC_013629
TCONS_00026771 mRNA downstream 150966 46010081 ~ 46020138 (-) True XLOC_013628
TCONS_00026770 mRNA downstream 409236 45734297 ~ 45761868 (-) False XLOC_013624
TCONS_00026776 mRNA upstream 10575 46194037 ~ 46208581 (-) True XLOC_013632
TCONS_00026778 mRNA upstream 27748 46211210 ~ 46241856 (-) False XLOC_013633
TCONS_00026777 mRNA upstream 27748 46211210 ~ 46241856 (-) False XLOC_013633
TCONS_00026779 mRNA upstream 38767 46222229 ~ 46241776 (-) False XLOC_013633
TCONS_00026780 mRNA upstream 39895 46223357 ~ 46241775 (-) True XLOC_013633
TCONS_00026769 other downstream 525802 45619558 ~ 45645302 (-) True XLOC_013622
TCONS_00026763 other downstream 1547509 44616001 ~ 44623595 (-) True XLOC_013614
TCONS_00026761 other downstream 1559852 44599806 ~ 44611252 (-) True XLOC_013613
TCONS_00026751 other downstream 2097676 44065033 ~ 44073428 (-) True XLOC_013607
TCONS_00026709 other downstream 5462580 40702788 ~ 40708524 (-) True XLOC_013577
TCONS_00026799 other upstream 1320315 47503777 ~ 47503894 (-) True XLOC_013649

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000028_02175774_02182966.mRNA True 1692 mRNA 0.47 3 CI01000028 2175524 ~ 2183460 (+)