RNA id: TCONS_00027903


Basic Information

Item Value
RNA id TCONS_00027903
length 1986
RNA type mRNA
GC content 0.44
exon number 12
gene id XLOC_013975
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 17640090 ~ 17644116 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCCACCAAGAGAACACCCTTGTGCTATTTTAGGATGTAAGGCTCAGCACAAGACAAATGAGCAACAGAGGCTTAAGTGGCTGAGTTTTATCTTTGAAGACAAGGTGCCTGAAAATGTACCAAAACTGTTGTATGTTTGCGCTAACCACTTTAGCGTAGACTGCCTCGAGAACGCGGGACAATACAACTCCGGATTCGCgagtaaattgtttttgaaaactggaTCAGTTCCTACAATACGTGATCCTGCCTCACATCAAGCCACGACGTCGACAAAGAGCAACAAGGTGGATGTTGCTTGCCAGACAGAAACTTTTCACACATCTTTACACAGTGTTGGTACCCAGTTGTGTTTAAGGACGCTTCAGGCTAAATGCAGGAGTACAAGTGTCCAGACAACAGTATCCAGTTTTGAACTGACTGTACCATCAGCGTCCTCTACTGCGTTTATGACTTCAACACCCCTCAAACCTTCACTAAAAAGACCTCGTCTGGAGCTggaggagaaggagaaggaggaggaggaagaaaaaGAAGCCGAAGAGACTTTGACAGAGTCAAAAATTATAGCCCAAGACTCGGATGTGACATTTGACCCTGCAGAGGAATGCACATCTGCAACTGAACCAACAGACTTGTCaatccAAGAATGCCCAGTTCATAACATTGCCAAGTTCATTGTCTATGAAACATGCCTCATGGAGCTCTTCAGTGACTGCCCAGTGTTGCAGAGGAGATGTGATGTAAAGTCACAAAGGCTTGGGACATTTCTGAGCGTACAGCAAGTCTGCCCACACTGCGAGTTTGTAAGAAAATGGAACAGTCAGCCAATTATTGGTAGTACTCCAGCTGGCAACCTGCATCTTTCTGCTGCAGTCTACTTGAGCGGTGCATCATTTTTTGTAGTTGAAAAGGTATTTGCTGCAATGaaactacacatttttaaatataattcatttcgCCGTCATGCAAGACTTTGCATTGAACCTgctattgtccacaagtggagaAATTGGCAGAGTGAAATGCTAGAACAAGAGAATGTGATTGTTGGAGGAGATATGAGGGCTGACTCCCCAGGTCACTCGGCCAAGTATGGGAGTTATACAATGATGGACCTTGCAACTAACACAGTGGTCGACCTACAGTTAGTCCAGagTAATGAGGTGGGCGGCAGTTACCATATGGAAAAAGAAGGCCTAAAGAGAAGCCTTGACCTGTGGGATGCCCGCGGTGTTCATCTGGAATGCATCATCACAGACCGACATCCTCAAATACAGAAATATCTCAGGGATCGAAATGTCACTCAGTTTTACGATGTGTGGCATATCGAGAAAGGAATTTTCAAAAAACTGGACAAGATATGCCAGATAAAGGGGTGTGAGAAGTTGCGTAAATGGTTACGTAGCATCAAAAACCACATCTACTGGACTGCTGCATCATCCACAACAGGTCCTGAAAGAGTGGCAAAGTGGACCTCTATCTTAAACCATGTACAAGACAAACATGTACATGAAGACCCCAATTTTCTGGCTTGTCTGCATCCGCAACGGATAAGCAGAGACAAGAACAAATGGCTGTCGGCTGCAACGATGCCATACTACAAGCTGGAGAAAGTTCTCGCTAACAAGAGAATATTGAAGGATGTGGCCAAGCTAAGTCCTCACCACCAGACATCAACTGTTGAAGCTTTCCACAGCGTCATACTGCGGTTTGCACCCAAAAATGTGGTATTACCATTTCTGGGGATGCTATGCAGgtTGTACTTGGCTGCACTGCATTACAATGAAAATGCCGGGCGTCCCCAGGCCACATCAGCAACTGGTAAACCTATTTACAAGCTTGCCTTTCCAAAGGCAAAGAAAGGAGAGTATAGGGTCCGAGAAGTGAAGACGCAGCAAACTTTCggtatgtatataaatgtttatagtattattaataattcaataaataaaaaaaataattgcactttacaTTCACAATGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000190365

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027901 lncRNA upstream 235990 17401992 ~ 17404100 (+) False XLOC_013974
TCONS_00027902 lncRNA upstream 235990 17403238 ~ 17404100 (+) True XLOC_013974
TCONS_00027896 lncRNA upstream 253200 17385587 ~ 17386890 (+) False XLOC_013973
TCONS_00029884 lncRNA upstream 285422 17353640 ~ 17354668 (+) True XLOC_013970
TCONS_00027890 lncRNA upstream 730603 16907709 ~ 16909487 (+) True XLOC_013968
TCONS_00029699 lncRNA downstream 202782 17846668 ~ 17846933 (+) True XLOC_013976
TCONS_00029885 lncRNA downstream 518956 18162842 ~ 18173519 (+) True XLOC_013977
TCONS_00029700 lncRNA downstream 649482 18293368 ~ 18297911 (+) False XLOC_013978
TCONS_00029702 lncRNA downstream 649974 18293860 ~ 18297911 (+) False XLOC_013978
TCONS_00029701 lncRNA downstream 649974 18293860 ~ 18297911 (+) False XLOC_013978
TCONS_00027900 mRNA upstream 232975 17400283 ~ 17407115 (+) False XLOC_013974
TCONS_00027898 mRNA upstream 244503 17386393 ~ 17395587 (+) True XLOC_013973
TCONS_00027894 mRNA upstream 246706 17385561 ~ 17393384 (+) False XLOC_013973
TCONS_00027895 mRNA upstream 246895 17385569 ~ 17393195 (+) False XLOC_013973
TCONS_00027897 mRNA upstream 246896 17385629 ~ 17393194 (+) False XLOC_013973
TCONS_00027907 mRNA downstream 849896 18493782 ~ 18597568 (+) True XLOC_013980
TCONS_00027908 mRNA downstream 983214 18627100 ~ 18648945 (+) False XLOC_013981
TCONS_00027910 mRNA downstream 1095199 18739085 ~ 18751905 (+) True XLOC_013982
TCONS_00027911 mRNA downstream 1114128 18758014 ~ 18766405 (+) False XLOC_013983
TCONS_00027912 mRNA downstream 1153737 18797623 ~ 18808021 (+) False XLOC_013984
TCONS_00027899 other upstream 236195 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027893 other upstream 266404 17373632 ~ 17373686 (+) True XLOC_013972
TCONS_00027881 other upstream 1555989 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 1570987 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 1578129 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027924 other downstream 1620873 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 2103733 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 2111064 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other downstream 2112291 19756177 ~ 19760904 (+) False XLOC_014002
TCONS_00027953 other downstream 2138527 19782413 ~ 19783624 (+) True XLOC_014004

Expression Profile

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