RNA id: TCONS_00027912


Basic Information

Item Value
RNA id TCONS_00027912
length 1745
RNA type mRNA
GC content 0.44
exon number 6
gene id XLOC_013984
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18797623 ~ 18808288 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTAGAAATGTTAAATGCTCAGATGGCACCCCCACGTCTGTCATCTGTCCGACCCTAAAGCGCAACATAAATACTCTTGATAAAACAGGGATGACAAAGTTAACCCCGACCTACTTATTAAAAGAGCGGATTAGCGAATAACTGCAAATAAAACACGTGCGGTCATAGCTCAAAATTCACTAATCACGTTGTCTAATAAGAACAGCAGACCACAGCTTCGTTGATTTTTCGATCCAAGAAAGTTTCGTTATATGTTAAAAAGAAATATAGGGAGCGGTGGAGGTGTGGCATTGTGAACAACAAGAGGGGTAGGTGGAAAATCCTAAAATATGGTTTGGATTGTTTTTTTATGCGGATCAGAGTCGGGCAGATTTTAAGAATTGTTGTCCAACTTCGTCTCAGGAGGTAAGAAGTTTGTTAAAGAACAATTTAGGATTCGTTTTAAAGTACGTTCCTGTTAGATCTCTCTTTGTTTAACGTAAGCAGTGATAAGTAAATCTCCAAAAGGCAGGATGTGTTGAGGGGGAAGGGAAATAGTCGAGGTTAGGAGTAGATAATAACGGTACTTTATTTTGTAAGCCCGAATGTGTACTTGGACATTACAGTGAAAGGACATCGAGTTTACTTGTTTGATTGTGTGTAAGGGGCAAACACTTCTTGTCATCTTCGAATCCCCTGGTCAGAAAAGTCGAGCATGATTTCCTGAActatttttcatcttttgaagCTTCTTATCATTTTTACAGATTGACTGTTCGTTACACCCTTAAACGTAATCAGTTTGCATGACTTCAATAACagccactcacacacacattctcttaaGCTTATATAAGATTCACCAGCCACCGATCATACTTCAACCACATTCATTGAGAGGCCAGCATGGCCAATATATATCCATATGGCTGCTTTACTCATGCTATTGTTAGAGGTATCCCAGAATCCTTTGGGAAGCTGGCAGAGGGTGGAGATGGATTTCAGACTGATATTGCCAAGGCCAAGCGTCAGATGGGGGTGTTGACAGGTGCATTAAGGCAAAAGGTGGGACTACAGTTGATTGAAATACAGGTAGATTCTGATCTGCCTGAGAGCTGGCGAATCGAAGACATTGCTGTTATCCAAGGTGACACAGCGCTCATTACACGACCCTTCAAACAGCAGAGATGCTGTGAGGCAGAGGCTGTGCGGCGAGTCCTAAATGAACTGAACATGACGGTGGTGGAAATGGGCGAAGAGGAAGGGGGTTCTGGTGGAGCCACTCTTGAAGGAAGTGATGTCCTTTTTACTGGAAAAGAGTTCTTCGTGGGCATTTCCAAACATACAAATCACCGGGGAGCAGAAATTCTGGCTGACACCTTCAGGGACTTTGCTGTTTCCACTGTGCCAGTGTGTGGAGGCTCTCGTCTGAAGAACATCTGCTCCATGGGTGGTCCCGATACCATCATTATTAGCAACAGTGATGGGGCAAAGAAAACACTCAGAGTGATGGAGCAGCTATCTGACCATCATTATGAGATCTTGTCAGTATCTGAGGAGGTTGCTgccaactgtatatatatcagaGGTCCTGCTAAAGTGGACTATCTCCTCCATCCCACAGCTGAGGAGTGCTCTGACAGTATTGCGGCCTTTCAGCGTTTGACAGACTACACCTTGCTGCCCACAGCCTGCAGTGAGGCCTCCAAACTCGGAGGAGCGCTGTCCTCCTTTTGTCTACTCATCAACAAGAAACATACCTATTGA

Function

GO:

id name namespace
GO:0045429 positive regulation of nitric oxide biosynthetic process biological_process
GO:0000052 citrulline metabolic process biological_process
GO:0006525 arginine metabolic process biological_process
GO:0006527 arginine catabolic process biological_process
GO:0016403 dimethylargininase activity molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function
GO:0016597 amino acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-913 Predicted to enable amino acid binding activity and dimethylargininase activity. Predicted to be involved in arginine metabolic process; citrulline metabolic process; and positive regulation of nitric oxide biosynthetic process. Predicted to act upstream of or within arginine catabolic process. Orthologous to human DDAH2 (dimethylarginine dimethylaminohydrolase 2).

Ensembl:

ensembl_id ENSDART00000166172

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029705 lncRNA upstream 34172 18758210 ~ 18763451 (+) True XLOC_013983
TCONS_00027909 lncRNA upstream 160833 18627302 ~ 18636790 (+) True XLOC_013981
TCONS_00027906 lncRNA upstream 415939 18368869 ~ 18381684 (+) False XLOC_013979
TCONS_00027905 lncRNA upstream 415939 18368869 ~ 18381684 (+) True XLOC_013979
TCONS_00029703 lncRNA upstream 499712 18293862 ~ 18297911 (+) False XLOC_013978
TCONS_00029707 lncRNA downstream 12656 18820677 ~ 18824454 (+) True XLOC_013985
TCONS_00029886 lncRNA downstream 24988 18833009 ~ 18834609 (+) True XLOC_013986
TCONS_00027915 lncRNA downstream 73867 18881888 ~ 18883535 (+) True XLOC_013987
TCONS_00029708 lncRNA downstream 151887 18959908 ~ 18966702 (+) False XLOC_013989
TCONS_00029710 lncRNA downstream 155798 18963819 ~ 18966956 (+) False XLOC_013989
TCONS_00027911 mRNA upstream 31218 18758014 ~ 18766405 (+) False XLOC_013983
TCONS_00027910 mRNA upstream 45718 18739085 ~ 18751905 (+) True XLOC_013982
TCONS_00027908 mRNA upstream 148678 18627100 ~ 18648945 (+) False XLOC_013981
TCONS_00027907 mRNA upstream 200055 18493782 ~ 18597568 (+) True XLOC_013980
TCONS_00027904 mRNA upstream 1153507 17642356 ~ 17644116 (+) True XLOC_013975
TCONS_00027914 mRNA downstream 4784 18812805 ~ 18826746 (+) False XLOC_013985
TCONS_00027916 mRNA downstream 95512 18903533 ~ 18912552 (+) False XLOC_013988
TCONS_00027917 mRNA downstream 95521 18903542 ~ 18915937 (+) True XLOC_013988
TCONS_00027918 mRNA downstream 175879 18983900 ~ 18988067 (+) True XLOC_013990
TCONS_00027919 mRNA downstream 220612 19028633 ~ 19173234 (+) False XLOC_013991
TCONS_00027899 other upstream 1393728 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027893 other upstream 1423937 17373632 ~ 17373686 (+) True XLOC_013972
TCONS_00027881 other upstream 2713522 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 2728520 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 2735662 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027924 other downstream 456738 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 939598 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 946929 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other downstream 948156 19756177 ~ 19760904 (+) False XLOC_014002
TCONS_00027953 other downstream 974392 19782413 ~ 19783624 (+) True XLOC_014004

Expression Profile

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