RNA id: TCONS_00029708


Basic Information

Item Value
RNA id TCONS_00029708
length 952
lncRNA type inter_gene
GC content 0.43
exon number 6
gene id XLOC_013989
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18959908 ~ 18978279 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGACTGTCAGATGCTCTTCATCTCAGGAGCTGTATTTTTATATGCTTGATAACAGATATAAGCGAGAAGAGGCTGAATCCAAAGCCCGAGAAGAAGCAGAGAAACAGAGGATCGAACGAGAGAAACACTTCCAGAAGGAGGAGCTGGAACGCTTGTAAAGAAAGAAGcgTCTGGAAGAAATCATGAAGAGGACTCGTAAGAGTGACGCAGGAGCACagTAATACAGAAAAATCCGTCAGAAGCTCTTCATACTGGTGCGACAAACCAATCACCAATGAGCTCTGTGTCCTGGGACACAGCACCGGTCATTAACGGAGCTCCGCccactaagcatcagaatggacTGTCCTCCAATGGAGACGCTGCAGACTTTAAGGAGATAATCAAGCTGTCCAATCACAGTGGGAACAGTGGGCAGAGTCAACCGGCTGACGACCCAATCATGGCCTTCGAGGGAGGAGAACCGTTCATGATGAAGAGGTGCTGTGAGAGATGAGATATCAGAGTCTTCTGGATATGAAGAGAAGAAGAGAAGCCTTACTCTACCACCGCTTCCACCCTGATGTGTGCCAAACCAACAAAAACAGACTGCTTTAACTTTAGAAACACAGCCGAGCCGGACGCGCTCAGGAGAAAGTGCCAGAAGACGACCTTAAAGAGACACTTATATACGTATACAACGTTTGCAAAAAGTCTCTGTCtatttcagtgtgtgtgtcatGGTGCAACATTTGTTGAGTTTCTTTAACAAGTCACCTGCCGATCATGTGGTGCACCTTAAAAGAGTCGCTATATATTGAATTTTAGAAAAGACAACTTGGCTTATCTTTATGatataaattattgttgttgttgttgctcttGTTATGATGTATTGTTATCGTTATTTTAAGTagagaaaaaaagcaaatatGTGTCTTGAACTATTGCGTTATTTAACGTGTGGCGCAT

Function

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0006310 DNA recombination biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0000819 sister chromatid segregation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0000075 cell cycle checkpoint biological_process
GO:0006950 response to stress biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0044770 cell cycle phase transition biological_process
GO:0007017 microtubule-based process biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0016569 covalent chromatin modification biological_process
GO:0016570 histone modification biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:0008608 attachment of spindle microtubules to kinetochore biological_process
GO:0033554 cellular response to stress biological_process
GO:0051052 regulation of DNA metabolic process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006260 DNA replication biological_process
GO:0010564 regulation of cell cycle process biological_process
GO:1901987 regulation of cell cycle phase transition biological_process
GO:1901988 negative regulation of cell cycle phase transition biological_process
GO:0006281 DNA repair biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0016043 cellular component organization biological_process
GO:0000280 nuclear division biological_process
GO:0000779 condensed chromosome, centromeric region cellular_component
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005813 centrosome cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0005815 microtubule organizing center cellular_component
GO:0005819 spindle cellular_component
GO:0044464 obsolete cell part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0098687 chromosomal region cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005623 obsolete cell cellular_component
GO:0005634 nucleus cellular_component
GO:1990234 transferase complex cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0005694 chromosome cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0008144 drug binding molecular_function
GO:0005488 binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0030554 adenyl nucleotide binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0032559 adenyl ribonucleotide binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027915 lncRNA upstream 76373 18881888 ~ 18883535 (+) True XLOC_013987
TCONS_00029886 lncRNA upstream 125299 18833009 ~ 18834609 (+) True XLOC_013986
TCONS_00029707 lncRNA upstream 135454 18820677 ~ 18824454 (+) True XLOC_013985
TCONS_00029706 lncRNA upstream 160068 18797965 ~ 18799840 (+) False XLOC_013984
TCONS_00029705 lncRNA upstream 196457 18758210 ~ 18763451 (+) True XLOC_013983
TCONS_00029711 lncRNA downstream 3428 18970130 ~ 18978279 (+) False XLOC_013989
TCONS_00029888 lncRNA downstream 3654 18970356 ~ 18978279 (+) False XLOC_013989
TCONS_00029889 lncRNA downstream 4481 18971183 ~ 18978279 (+) True XLOC_013989
TCONS_00027961 lncRNA downstream 1046051 20012753 ~ 20014127 (+) False XLOC_014008
TCONS_00027962 lncRNA downstream 1065218 20031920 ~ 20032628 (+) True XLOC_014008
TCONS_00027917 mRNA upstream 43971 18903542 ~ 18915937 (+) True XLOC_013988
TCONS_00027916 mRNA upstream 47356 18903533 ~ 18912552 (+) False XLOC_013988
TCONS_00027914 mRNA upstream 133162 18812805 ~ 18826746 (+) False XLOC_013985
TCONS_00027913 mRNA upstream 151620 18799319 ~ 18808288 (+) True XLOC_013984
TCONS_00027912 mRNA upstream 151887 18797623 ~ 18808021 (+) False XLOC_013984
TCONS_00027918 mRNA downstream 17198 18983900 ~ 18988067 (+) True XLOC_013990
TCONS_00027919 mRNA downstream 61931 19028633 ~ 19173234 (+) False XLOC_013991
TCONS_00027920 mRNA downstream 65439 19032141 ~ 19173011 (+) True XLOC_013991
TCONS_00027921 mRNA downstream 227149 19193851 ~ 19217263 (+) True XLOC_013992
TCONS_00027922 mRNA downstream 274670 19241372 ~ 19270746 (+) False XLOC_013993
TCONS_00027899 other upstream 1556013 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027893 other upstream 1586222 17373632 ~ 17373686 (+) True XLOC_013972
TCONS_00027881 other upstream 2875807 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 2890805 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 2897947 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027924 other downstream 298057 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 780917 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 788248 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other downstream 789475 19756177 ~ 19760904 (+) False XLOC_014002
TCONS_00027953 other downstream 815711 19782413 ~ 19783624 (+) True XLOC_014004

Expression Profile

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