RNA id: TCONS_00027915



Basic Information


Item Value
RNA id TCONS_00027915
length 956
lncRNA type lincRNA
GC content 0.45
exon number 2
gene id XLOC_013987
representative True

Chromosome Information


Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18881888 ~ 18883535 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


aaaaaactcaaggattttagatcctgatgatcgttaaacgcgtcataacagtgttgtgaaaagggtgtaattgttaaaaataggtacaaacattagatataaacaaaaacctaaacaaacacttctatgtacataacgtcataaaaatacttgttttatttacctcgcgctgccgtccttgtactgccgtgaacaggaaattctgggaatggaggacggagagttgaatcgattcgtcttcaacaaaccgatcagtgtgacatcaaaacatcgcgagaacaacagacagctccgtgtgcatttgaatccatctcgcgatattgtatcacttcaggtacgcgcctactgattcgttgattcaaacgagttgtgaatcaagaagcctctaaagatccgaatcaaactgcagcagcacgccactaggttttgctcagacttttgggacgtttggaattgctccgtcttgtcaccatgtaacacatagcagcaagacccatgggatttcatcagccactcaccatcagagtcctcagtggaagctgagaagagcagaagaggaagccaagcaagagatgccagaaaaaaagggggaaggaaataatgtgttattttgctgtttgagtataggcaggtgcagtgggtagcacaatcgcctcacagcaagaaggtcgctggttcgagcctcggctgggtcagttggcatttctgtgtggagtttgcatgttctccccatgttagcgtgggtttcctccgggtgctcccacaagtccaaaaatatgtggtgacattgggtaaggtaaaattgtccgtagtgtatgtgtgtgaatgagtatgtatggatgtttcccagtgatgggttgcagctgggtggcaacacggtggcacagtaggtagtgctgtttcctcacatcaagaaggtttctgcatggagttctccctgcgttcgcgtgggtttc

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000164591

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00029886 lncRNA upstream 47279 18833009 ~ 18834609 (+) True XLOC_013986
TCONS_00029707 lncRNA upstream 57434 18820677 ~ 18824454 (+) True XLOC_013985
TCONS_00029706 lncRNA upstream 82048 18797965 ~ 18799840 (+) False XLOC_013984
TCONS_00029705 lncRNA upstream 118437 18758210 ~ 18763451 (+) True XLOC_013983
TCONS_00027909 lncRNA upstream 245098 18627302 ~ 18636790 (+) True XLOC_013981
TCONS_00029708 lncRNA downstream 76373 18959908 ~ 18966702 (+) False XLOC_013989
TCONS_00029710 lncRNA downstream 80284 18963819 ~ 18966956 (+) False XLOC_013989
TCONS_00029709 lncRNA downstream 80284 18963819 ~ 18966956 (+) False XLOC_013989
TCONS_00029887 lncRNA downstream 80555 18964090 ~ 18978279 (+) False XLOC_013989
TCONS_00029711 lncRNA downstream 86595 18970130 ~ 18978279 (+) False XLOC_013989
TCONS_00027914 mRNA upstream 55142 18812805 ~ 18826746 (+) False XLOC_013985
TCONS_00027913 mRNA upstream 73600 18799319 ~ 18808288 (+) True XLOC_013984
TCONS_00027912 mRNA upstream 73867 18797623 ~ 18808021 (+) False XLOC_013984
TCONS_00027911 mRNA upstream 115483 18758014 ~ 18766405 (+) False XLOC_013983
TCONS_00027910 mRNA upstream 129983 18739085 ~ 18751905 (+) True XLOC_013982
TCONS_00027916 mRNA downstream 19998 18903533 ~ 18912552 (+) False XLOC_013988
TCONS_00027917 mRNA downstream 20007 18903542 ~ 18915937 (+) True XLOC_013988
TCONS_00027918 mRNA downstream 100365 18983900 ~ 18988067 (+) True XLOC_013990
TCONS_00027919 mRNA downstream 145098 19028633 ~ 19173234 (+) False XLOC_013991
TCONS_00027920 mRNA downstream 148606 19032141 ~ 19173011 (+) True XLOC_013991
TCONS_00027899 other upstream 1477993 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027893 other upstream 1508202 17373632 ~ 17373686 (+) True XLOC_013972
TCONS_00027881 other upstream 2797787 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 2812785 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 2819927 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027924 other downstream 381224 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 864084 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 871415 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other downstream 872642 19756177 ~ 19760904 (+) False XLOC_014002
TCONS_00027953 other downstream 898878 19782413 ~ 19783624 (+) True XLOC_014004

Expression Profile


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