RNA id: TCONS_00029701


Basic Information

Item Value
RNA id TCONS_00029701
length 2809
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id XLOC_013978
representative False

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 18293368 ~ 18297911 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTtaattacgaacacctgacctgcagtgcagcagaattcagaggtaagcgtgtttttagatgctttaatgttttatttaccccccgattttgttttacacacagtgtatcttaaatgtgacttggtgtagtgtttcgaattttgaagcatttaaaactttccagtttggtttttagtctttttttgcgctccggtgacgcgcagctaacctcgaggtaatgtgacatgtttaacgttagtctaaatgagcgtttttatggcaaattcaaagcgataaactccaaacgcagtttaaagttactgggcaacgttataaaacaatatcctttttatacgctgtatcattagtgttattattacaaaatgaactgctgtcgtttcactgttgttgttgtttttgcttttagacatgtaacttaacgtactccagagacgcactaacttgtacagcattgaatggaaaaggctttgtccatGTCCAGCTGAGGGGTATCAAGAACACGCAGATGGCCTAAacctgtgtcagcctggacagactgcagttctgctattccacgccaaggcttttgtatggatgtctgactactactgtgttatctaaaggttttctggaagctccatttgaggtcatcaaggacatactgatggcctaaaccagtgtcagcctagacagacagacagacatctattgcagttctgctacacaagaccaaactctctgcttttgtatggatgtctgacttgtacggtgttctctaaaggtataactggagcaaaacaacagcatccgttacagtaaaatttgtgttcataaaagatatgtgtaacaggtccagtacatttgacataaaggttaaatcacagtaagtactgtaaaaataacttgtttgcctttgccacaacaggtcatggtgtgtgcatactgctcgtagtaaacacacatgctgatctgatgcgggagagatatacgcaaacacatttgtatttactgttttgttttgcctcactaaagtgttgttggagcttggtatgttcacagttgaaatcactgaagtcacatggaacgttttgacaatgtgttttgtgccttatcttgacaatgaccatcttgggactattgctgtctgtagaggatgaggagcatttaatctaaaatattttagtttgtgttctgaagattaacaggtctctgggatgacacaagtacttaataacagaacctatatgaacagttaatgtgacatgtaatagtgaaatagtggtcctacattcacaaatgtgagccattattataagacccctgtgaacatgcaatttttatgatactaataataaaggaataacaaattgcttttactgttgtgtttgtgagagagaatcaaatcatatattctacacattttcttgatgatttactgaaatatttgtctacatgttccactgtcacaggtgctcagttttgctgcagtaatgctaaacacaatagatggtctttatgcaaaaaaaaaaaaaaaaaaaaaaaaaactactaaatatttagcatgcagacctgcaaagagaaggagtaatgtcaggtttagattatagcatgagttttcacttgtgaaagtgaagccattcattcacaatgaattggaatagcaaacctcattattgattttgtaggaaactcacctggtgtttgagaaataaatatgtatttaactgctagactgatatagatgtttaagtgttttacacttgattctttgtcccagtgccatcttttacctcaagtttttctctcaacctataaaacctcaaacagatgtaatgtatttcacttgtgattcttagttgtgagtgatgttttttattttatttttttttactgcagccactttaaaaatgggtattttgtaaactttgtaaacggaattgtattttggagactgtgatggttgaagcgtagtttagttacttagtttaatttggttagtatctgtctttctgaagacggtaacactttacaataaggttgtattagtaagtgttaatgtatttactaacatgaacaaagaacaatgaagcatctttcatataaagaaagtacagttcatgtcagctcagtgcattaatgttaacaagcatgcattttgattttaatagcatcgggacatatttcaattaattaaatgattaataaatgctgtacaagtatttgttctttgttcatgttagtaaacattaactaactttaattcatgaaacctaattaaaaagtgactatttaattgtatgcctttttctgtatttgagcatgtatagtaacctgcatggtttaaatgaactatgtatgctgtaaatgttgctgtatatttagaataattgaaataatgaggtgtgtattaaataaattgatacacaggctaagttgtgtatttgtgtcgtgtatttttaattagtaaaaatttgtttgctatatttatggactttgcgttgtatgtaattcctatttaacttacgttgaaatgtacgacggtgaaacaacgtcattgtatcaacgttgatccaatttgcaaaatcgaaaggtaattcaaccttcattcaacgtctacaaaacgaccaTAATTCACCCATGAAAaaggtaagagtgaaacaacgttgtgatttcaacggtgaatcactggtggtggtccgacggtgaaacaacgtcactatataaacgttgatccaatttgcaaaatcgaaaggtaattcaacgttgatccaaccatagacctgacgttgattcaatgttgaatcaccgttgaaatgccggctgggtGTA

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0046034 ATP metabolic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0007275 multicellular organism development biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0060284 regulation of cell development biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00029885 lncRNA upstream 120341 18162842 ~ 18173519 (+) True XLOC_013977
TCONS_00029699 lncRNA upstream 446927 17846668 ~ 17846933 (+) True XLOC_013976
TCONS_00027901 lncRNA upstream 889760 17401992 ~ 17404100 (+) False XLOC_013974
TCONS_00027902 lncRNA upstream 889760 17403238 ~ 17404100 (+) True XLOC_013974
TCONS_00027896 lncRNA upstream 906970 17385587 ~ 17386890 (+) False XLOC_013973
TCONS_00027906 lncRNA downstream 70958 18368869 ~ 18381684 (+) False XLOC_013979
TCONS_00027905 lncRNA downstream 70958 18368869 ~ 18381684 (+) True XLOC_013979
TCONS_00027909 lncRNA downstream 329391 18627302 ~ 18636790 (+) True XLOC_013981
TCONS_00029705 lncRNA downstream 460299 18758210 ~ 18763451 (+) True XLOC_013983
TCONS_00029706 lncRNA downstream 500054 18797965 ~ 18799840 (+) False XLOC_013984
TCONS_00027904 mRNA upstream 649744 17642356 ~ 17644116 (+) True XLOC_013975
TCONS_00027903 mRNA upstream 649974 17640090 ~ 17643886 (+) False XLOC_013975
TCONS_00027900 mRNA upstream 886745 17400283 ~ 17407115 (+) False XLOC_013974
TCONS_00027898 mRNA upstream 898273 17386393 ~ 17395587 (+) True XLOC_013973
TCONS_00027897 mRNA upstream 900666 17385629 ~ 17393194 (+) False XLOC_013973
TCONS_00027907 mRNA downstream 195871 18493782 ~ 18597568 (+) True XLOC_013980
TCONS_00027908 mRNA downstream 329189 18627100 ~ 18648945 (+) False XLOC_013981
TCONS_00027910 mRNA downstream 441174 18739085 ~ 18751905 (+) True XLOC_013982
TCONS_00027911 mRNA downstream 460103 18758014 ~ 18766405 (+) False XLOC_013983
TCONS_00027912 mRNA downstream 499712 18797623 ~ 18808021 (+) False XLOC_013984
TCONS_00027899 other upstream 889965 17400263 ~ 17403895 (+) False XLOC_013974
TCONS_00027893 other upstream 920174 17373632 ~ 17373686 (+) True XLOC_013972
TCONS_00027881 other upstream 2209759 16064463 ~ 16084101 (+) False XLOC_013964
TCONS_00027883 other upstream 2224757 16068970 ~ 16069103 (+) True XLOC_013965
TCONS_00027879 other upstream 2231899 16061826 ~ 16061961 (+) True XLOC_013963
TCONS_00027924 other downstream 966848 19264759 ~ 19264881 (+) True XLOC_013994
TCONS_00027938 other downstream 1449708 19747619 ~ 19747694 (+) True XLOC_014003
TCONS_00027941 other downstream 1457039 19754950 ~ 19768673 (+) False XLOC_014002
TCONS_00027942 other downstream 1458266 19756177 ~ 19760904 (+) False XLOC_014002
TCONS_00027953 other downstream 1484502 19782413 ~ 19783624 (+) True XLOC_014004

Expression Profile

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