RNA id: TU130189


Basic Information

Item Value
RNA id TU130189
length 465
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G113744
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11382177 ~ 11383434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTACATGTGTGATGTCACCTCTCCAGGGTAGTTGCATGTATGATGTCATCTCTCCAGGGTAGTTAAATGTGTGATGTCATCCCTCCAGGGTAGTTAAATGTGTGATGTCATACTGTTTATACTGTGTCTAACTCAGGTGATGTTTATACTGTATCTAACTCAGGTGATGTTTATACTGTGTCTAACAGGTGATGTTTATACTGTGTCTAACTCAGGTGATGTTTATACTGTGTCTAACTCAGGTGATGTTTATACTGTGTCTAACAGGTGATGTTTATACTGTATCTAACTCAGGTGATGTTTATACTGTGTCTAACTCAGGTGATGTTTATACTGTGTCTAACAGGTGATGTTTATACTGTGTCTAACAGGTGATGTTTATACTGTGTCTAACTCAGGTGATGTTTATACTGTGTCTAACTCAGGTGATGTTTATACTGTGTCTAACAGGTGATGTTTATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130186 lncRNA downstream 7398 11374552 ~ 11374779 (-) True G113743
TU130185 lncRNA downstream 8572 11373365 ~ 11373605 (-) True G113742
TU130181 lncRNA downstream 9171 11371263 ~ 11373006 (-) False G113741
TU130197 lncRNA upstream 10034 11393468 ~ 11393896 (-) True G113745
TU130204 lncRNA upstream 15164 11398598 ~ 11400014 (-) True G113749
TU130241 lncRNA upstream 31222 11414656 ~ 11414907 (-) True G113758
TU130247 lncRNA upstream 34476 11417910 ~ 11419517 (-) True G113761
TU130255 lncRNA upstream 37621 11421055 ~ 11422757 (-) True G113762
XM_036937950.1 mRNA downstream 120668 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 120668 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 213539 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 322704 11058984 ~ 11059473 (-) False LOC118937688
XR_005035042.1 mRNA downstream 500787 10879856 ~ 10881390 (-) True LOC118937685
XM_036938010.1 mRNA upstream 14658 11398092 ~ 11402862 (-) True LOC110514530
XM_036938038.1 mRNA upstream 88505 11471939 ~ 12290703 (-) False LOC110513475
XM_036938043.1 mRNA upstream 88505 11471939 ~ 12290706 (-) False LOC110513475
XM_036938036.1 mRNA upstream 88505 11471939 ~ 12290710 (-) False LOC110513475
XM_036938048.1 mRNA upstream 88505 11471939 ~ 12290710 (-) False LOC110513475
TU130157 other downstream 29436 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 29436 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 56565 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 69519 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 164023 11210473 ~ 11218154 (-) True G113688
TU130213 other upstream 243101 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 1200593 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1227235 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1324393 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1351880 12735314 ~ 12739157 (-) True G114442

Expression Profile