RNA id: TU130241


Basic Information

Item Value
RNA id TU130241
length 252
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G113758
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11414656 ~ 11414907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgccctcttcacgactgtcttactgtgtttggaccattctagtttgttggtgatgtggacacctaggaacttgaagctctcaacctgctccactgcagccccgtcgatgagaatgggggcgtggctcggccctccttttcctgtagtccacagtcatctcctttgtcttgattactttgagggagaggttgttgtcctggcaccacatggccaggtctctgacctcgtccctataggctgtctcgtcgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130204 lncRNA downstream 14642 11398598 ~ 11400014 (-) True G113749
TU130197 lncRNA downstream 20760 11393468 ~ 11393896 (-) True G113745
TU130189 lncRNA downstream 31222 11382177 ~ 11383434 (-) True G113744
TU130186 lncRNA downstream 39877 11374552 ~ 11374779 (-) True G113743
TU130185 lncRNA downstream 41051 11373365 ~ 11373605 (-) True G113742
TU130247 lncRNA upstream 3003 11417910 ~ 11419517 (-) True G113761
TU130255 lncRNA upstream 6148 11421055 ~ 11422757 (-) True G113762
TU130264 lncRNA upstream 14794 11429701 ~ 11430062 (-) True G113767
TU130269 lncRNA upstream 19671 11434578 ~ 11435264 (-) False G113770
TU130271 lncRNA upstream 19671 11434578 ~ 11435662 (-) False G113770
XM_036938010.1 mRNA downstream 11794 11398092 ~ 11402862 (-) True LOC110514530
XM_036937950.1 mRNA downstream 153147 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 153147 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 246018 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 355183 11058984 ~ 11059473 (-) False LOC118937688
XM_036938038.1 mRNA upstream 57032 11471939 ~ 12290703 (-) False LOC110513475
XM_036938043.1 mRNA upstream 57032 11471939 ~ 12290706 (-) False LOC110513475
XM_036938036.1 mRNA upstream 57032 11471939 ~ 12290710 (-) False LOC110513475
XM_036938048.1 mRNA upstream 57032 11471939 ~ 12290710 (-) False LOC110513475
XM_036938060.1 mRNA upstream 130183 11545090 ~ 12290710 (-) False LOC110513475
TU130157 other downstream 61915 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 61915 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 89044 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 101998 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 196502 11210473 ~ 11218154 (-) True G113688
TU130213 other upstream 211628 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 1169120 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1195762 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1292920 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1320407 12735314 ~ 12739157 (-) True G114442

Expression Profile