RNA id: TU130247


Basic Information

Item Value
RNA id TU130247
length 790
lncRNA type antisense_over
GC content 0.59
exon number 6
gene id G113761
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 11417910 ~ 11419517 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTCTACTTCtgacccaacctataggtctacttctgacccaacctataggtctacttctgacccaacctataggtctacttctgacccaacctataggtctacttctaccccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttctgacccaacctataggtctacttctgacccaacctataggtctacttctacccaacctataggtctacttctgacccaacctataggtctacttctacccaacctataggtctacttctgacccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttctacccaacctataggtctacttcctcccagcctataggtctacttctacccaacctataggtctacttctgacccaacctataggtctacttctgacccaacctataggtctacttcctccccaacctataggtctacttcctcccaacctataggtctacttctacccaacctataggtctacttctgacccaacctataggtctacttctggCCCCCAGTAATAAAACATGGGGGATTACCTGTACTCGAAGTAGCAGTCACTTTCAATAAACAAGGGTAGTCTTTCTTTTAGGATCCACTCCACTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130241 lncRNA downstream 3003 11414656 ~ 11414907 (-) True G113758
TU130204 lncRNA downstream 17896 11398598 ~ 11400014 (-) True G113749
TU130197 lncRNA downstream 24014 11393468 ~ 11393896 (-) True G113745
TU130189 lncRNA downstream 34476 11382177 ~ 11383434 (-) True G113744
TU130186 lncRNA downstream 43131 11374552 ~ 11374779 (-) True G113743
TU130255 lncRNA upstream 1538 11421055 ~ 11422757 (-) True G113762
TU130264 lncRNA upstream 10184 11429701 ~ 11430062 (-) True G113767
TU130269 lncRNA upstream 15061 11434578 ~ 11435264 (-) False G113770
TU130271 lncRNA upstream 15061 11434578 ~ 11435662 (-) False G113770
TU130272 lncRNA upstream 15061 11434578 ~ 11435662 (-) False G113770
XM_036938010.1 mRNA downstream 15048 11398092 ~ 11402862 (-) True LOC110514530
XM_036937950.1 mRNA downstream 156401 11248037 ~ 11261509 (-) False prelid3a
XM_036937954.1 mRNA downstream 156401 11248037 ~ 11261509 (-) False prelid3a
XM_021586929.2 mRNA downstream 249272 11165113 ~ 11168638 (-) True lratd2b
XR_005035048.1 mRNA downstream 358437 11058984 ~ 11059473 (-) False LOC118937688
XM_036938038.1 mRNA upstream 52422 11471939 ~ 12290703 (-) False LOC110513475
XM_036938043.1 mRNA upstream 52422 11471939 ~ 12290706 (-) False LOC110513475
XM_036938036.1 mRNA upstream 52422 11471939 ~ 12290710 (-) False LOC110513475
XM_036938048.1 mRNA upstream 52422 11471939 ~ 12290710 (-) False LOC110513475
XM_036938060.1 mRNA upstream 125573 11545090 ~ 12290710 (-) False LOC110513475
TU130157 other downstream 65169 11349342 ~ 11352741 (-) False G113733
TU130159 other downstream 65169 11349342 ~ 11352741 (-) True G113733
TU130124 other downstream 92298 11323041 ~ 11325612 (-) True G113720
TU130103 other downstream 105252 11310843 ~ 11312658 (-) True G113712
TU130068 other downstream 199756 11210473 ~ 11218154 (-) True G113688
TU130213 other upstream 207018 11626535 ~ 11658668 (-) True LOC110513475
TU131242 other upstream 1164510 12584027 ~ 12585140 (-) True G114390
TU131258 other upstream 1191152 12610669 ~ 12613680 (-) True G114402
TU131298 other upstream 1288310 12707827 ~ 12709315 (-) True G114424
TU131319 other upstream 1315797 12735314 ~ 12739157 (-) True G114442

Expression Profile