RNA id: XM_036974314.1


Basic Information

Item Value
RNA id XM_036974314.1
length 4670
RNA type mRNA
GC content 0.55
exon number 23
gene id LOC110520056
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 47315217 ~ 47441923 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCATACTCGTATTCCTTTGGCGTGGAAgcggagagggaagaagggatcTTGTTCTTGACTATGGAGGCGAGTTACATTGCATGGGACTAGGAGCGGACTTGTAGAGGTGCTACTTCCATGCTGATTAAGTTACATGTTCCAATGTGGATCCACGCCAAAACACAGCGATCACAATAATACTCCTTAAGgagGAATGCCAGCTCCTGAGCAGAGCCCAGCGACGGAGGAGGGGCTTCTGCTGACCGTCAGAGAGGGAGCCCAACTCCCCGACCGGAACATGGAGGCCGACAGCACCGCCAACAACATCCTGGCCTCCGTCAAAGAGCAGGAGCTCCAGTTTGAGAGGCTGACCAGGGagctggaggtagagagacagattgtGGCCAATCAGCTGGAAAGATGCAGACTCGGGGCCGAGTCGCCAGGCGCTGCTAGCGACAGCTCGTCTGAGAAGTCCCTCCCCTGGAGATCTGCAGATGCCTCGACCTCGCGGGACACCAAGTCTCGAGTGACAGACACTTCTCAGTCGCCCACCTACCGCCTCCGAACAGAGCAGGAGCAGGTGGCCCTGTACTCCCCAGAGCAGACCTCGCTCCATGAAAGGTCTACAGGGAACTCCCGCAGCTCCACCCAGATGAACTCGTACTCGGACAGTGGCTACCAGGATGCCAGCAACTACTACGTCAGCCAGAACCAGAATAGTCTGGCTAAGACTGACCTGAGGATGCCGCGCTCTTACCCGGGCACAGGCGGCACCTCTACCCTCCTGAGGAATGCCAGGGCCGAGGGCCAGGCCCAGGTCCAGGCCCCTGTGTTAACCGCCGCAGCGCCGGGTCGAGCCATGAGGAGGGTGAGCTCGGTGCCCTCCCGGACCCAGTCCCCGGCCTATGGCAACAGTGTGTCCCCCTCACGGGGCTCCCTGAGGGCCACCATGGGGAGTAACTACTGCTCGCCCATTGTCACAGAGCCCAAGCCTCTCTCCAGTATCTTCTCCACCACCCTGCCCTCAGCCCAGCGCGCCGGCTCCCCTTACAACACCCAGAAGAGTTCCCCCGCCGCCCTCCGCCGCATGGGCAGCGCCAACTCCCGCTCGGGCAGTGCCAGCCGCACCACTTCACCATACCAGGCCCTGGGGTCAGCCTCGGTGCGAATGGGCTCCCCCCTAACGATGGTGGACGGCCCCTTACCCCTCACCCAGCAGCCAGGGGGGTCGGCGGCGTCTCCAGGGCGCTCCAGCATGACGGCCCAGCCCCAGCACTATGGCTCCACCTTGCCTCGGTCGTTGATCCACCACGATGCAGACCCCTACGGAGCTCAGAGCTACGACGTCTACGAGAGGATGATCCCACGGCCTGACAGCCTCACAGAACCCCTGGTCGATGATGACCTTCAAGGCATGCGGAGCTCGTACGCCAGTCAGCACAGCCAGCTGGGCCAGGACCTGAGGTCAGCCATGTCACCTGACCGCCACATCACGCCCATCTACGAGGACAGGACCTTCCAGGGGCCCCTGTACCGTAGCCCCAACCACCACGACCCAGTGGACCTCAACAACTCCTCGCAGAGCGCCATCTACAGGAGTCCGTCAGGCGTGGGGACCCTCCAGAGGACCTCCAGCCAGCGTAGTGCCATGACGTACCAAAGAAGCAACTACGCTCTGAACACGGCGGCCACGTACGCAGAGCCCTACCGCTTGGCTCAGTACCGGCCCTCCGAGGGCAACTACGTCAGGCAGCCGGTCGTCATGGATGACGGGGCCACCCGCTCGCCCTCCATAGACAGCATCCAGAAGGACCCGAGGGAGTTTGCCTGGCGTGACCCCGAGCTGCCCGAGGTCATTCATATGCTGCAGCACCAGTTCCCCTCGGTGCAGGCCAACGCCGCCGCATACCTGCAGCACCTGTGCTTCGGCGATAATCGAGTCAAGGCGGAGGTACATTGCGTGTGCCGTCTAGGGGGAATCAAACACCTGGTGGACCTGTTGGACCACAAAACCCTGGAGGTCCAGAGGAACGCCTGTGGAGCTCTGAGGAACCTGGTCTACGGGAAAGCCACGGACGACAACAAGGTGGCCGTGAGAAACGCAGGTGGCGTCCCCGCTCTGCTCAGACTGCTGAGGAAGACTGTAGACGCTGAAGTGAGAGAGCTGGTCACGGGGGTGCTGTGGAACTTGTCCTCCTGTGATTCCGTCAAGATGACAATCATTCGGGATGCCTTAACTACTCTGACAAACACTGTGATCATACCTCACTCTGGATGGAGCAGCACAACGTttgacaatgaccacaagctcaAGTTCCACTCATCTCTGGTCCTGAGGAACACAAGTGGCTGTCTGAGGAACCTGAGCTCGGCGGGGGAGGAGGCTAGAAAACAGATGCGCTCCTGTGAGGGGCTGGTGGACTCCTTACTCTACGTCATCAAGGCCTGTGTCAACACCTCGGACTTCGACAGCAAGatTGTGGAGAACTGTATTTGCACTCTGAGGAACCTGTCGTATCGCCTGGAGCTGGAGATGCCCCCGTCAAGGTTTCAGGGAGCCCAGGAGCTGGACGGTCTACTGGGCAGTGAGTCTCCCAGTAAGGACGTGGAATCCAGCTGCTGGGgccggaagaagaagaagaagaaaaagagctCCCAGGAAGACCAGTGGGACGGAGTGGGCCCCATCCCTGGCTTCTCCAAGTCCCCCAAGGGGGCGGAGATGTTGTGGCACCCAGCCGTGGTGAAGCCCTACCTGACCATGCTGGCCGAGAGCTCCAACCCTGCCACTCTGGAGGGCTCAGCGGGCTCCTTACAGAACCTGTCTGCTGGGAACTGGAAGTTTGCGGCGTACATCCGTGCGGCGGTGCGCAAGGAGAAGGGTCTGCCCATCCTGGTGGAGCTGCTGAGGATGGACAACGACAGGGTGGTCTGCTCTGTGGCCACCGCCCTGAGGAACATGGCCCTGGACGTCAGGAACAAGGAGCTCATAGggaAGTATGCGATGAGGGACCTGGTGAACCGTCTCCCTGGGGGCGACACCACCCTGCTCTCTGACGAGACGGTGGCGGCCATCTGCTGCACCCTGCACGAGGTCACCAGCAAGAACATGGAGAACGCCAAGGCACTGGCCGACACAGGTGGCATCGAAAAGCTGTTCAACATCACcaagggcaggggagagagGTACTCCATGAAGGTGGTGAAAGCTGCCGCTCAGGTCCTCAACACACTCTGGCAGTACAGAGACCTGAGAACTATCTATAAGAAGGACGGATGGAACCAACACCACTTCATTACGCCCGTGTCTACTCTAGAGCGCGACAGATTCAAGTCTCAGCCCACCCTCCCTACCAGCACCATACAGATGTCACCGGTCAACCAGTCAGCTGGCAGTGCAACCTCCTCTCCTGCAATGCTGGGAATCAAAGAACACCGTTCTGATTATCACAGGGCACAGTCAACTATGCAATTTTATAAAAACCAAGGGGACAACAATGTACATAAATACCAATATACAGGGTCTGGAAAGCCGTCACCATATTATGTCGGGTCCTACTCCTCACCGACAAGAGAGGACCCCAGAAGAGCACAGCAGCAGATGTACTACACTGAGGAGCCGAGCAGGCGGAACTACGACACCTACAGAATGTACCTGCAGTCTCCACACGGCTATGATGACCCCTACGTGGAGGAAGTGGTCAGCTTCCCCCCCACGGCAGACTACAGCTCTAAGTCGCACGGTCACGGACTCAAATCCACCACGAACTACGTGGACTTTTACTCTACCACCCGGAGGCCTTCCTACAGGGCGGATCAGTACCCAGGTTCGCCAGATTCCTGGGTATAGGGACTCCATCTTGGAATCCCCGACAGATGAACTCTTGAACTtttacttgtgtgtgtgtttttgaaaaTGTGGATCTGAATGTGGAGATCGACGCGATGGCAGATGGCAGATGGAGAATGGAATGTTAACCAAAGAAAGAAGGAAACCAaggaatgtgttttttttattttttttaaagaagagcAGTGGGTGTGTTCGGGGCGGGCGGCACTGGACATTATCGTGAGTGGTGTCCTGCTCTGTCTAGATGTTACTTTTTCTTTTGGAAACCTGTAGCTGTGGTAGCATGGTGAAGGTGTGGGTTATGTGACAAAAGGTTTGCGGTAAAGAGTCAGAAGGGGGAATGTGTATGTTCGTAGGCAAAAATGGATCATGAACTcatatctgtaaaaaaaaaaaaatgtgttgtaaCCTAAAGATGTTAGTTTGTACAGAgggatcaaattgtatttgttctTAATGTTGAGATTGTGTATGCCATGGAGTCTTGTACATTTCCTTCATTTTATTGTAAATACAGAAAAAATGCCACCTGGTTTACGTTCATCAGCACTGGTAAAAGAGGTGTGCCATGTCAAATCTATATTATAGATCTATAAATATATGAAGAAATAAAGGGATGAGGGAAAAGATGGCATCATAACACAAACATGCAACGATAATAAAAGTTCacttttgttttttaaatgaattgTGTAATTGCAGACATTTTTGTGACTTTGAAAGATATTCTCTTTATTTTTCCATTCTCTGTCTTGGATCTTTCATCGATAGTTCGGACATTTTCTGTGCACAACAACCAACAGAAATAAATGTGAACATTTGGTCCATGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU301348 lncRNA upstream 129598 47184571 ~ 47185621 (+) True G265120
TU301380 lncRNA upstream 137584 47175948 ~ 47177635 (+) True G265152
TU301378 lncRNA upstream 140059 47174873 ~ 47175160 (+) True G265150
TU301376 lncRNA upstream 142401 47172506 ~ 47172818 (+) True G265148
TU301375 lncRNA upstream 142719 47172285 ~ 47172500 (+) True G265147
TU301557 lncRNA downstream 789 47442712 ~ 47445211 (+) True LOC110520057
TU301855 lncRNA downstream 38319 47480242 ~ 47480460 (+) True G265577
TU301903 lncRNA downstream 143426 47585349 ~ 47585634 (+) True G265620
TU301904 lncRNA downstream 143905 47585828 ~ 47586049 (+) True G265621
TU301917 lncRNA downstream 162417 47604340 ~ 47604653 (+) True G265634
XM_021597035.2 mRNA upstream 55900 47256164 ~ 47259319 (+) True LOC110520054
XM_021597036.2 mRNA upstream 60121 47245494 ~ 47255098 (+) False LOC110520055
XM_021597041.2 mRNA downstream 583 47442506 ~ 47445211 (+) False LOC110520057
XM_021597048.2 mRNA downstream 5454 47447377 ~ 47721895 (+) False LOC110520058
XM_021597043.2 mRNA downstream 5454 47447377 ~ 47724843 (+) False LOC110520058
XM_021597045.2 mRNA downstream 5454 47447377 ~ 47724843 (+) False LOC110520058
XM_021597046.2 mRNA downstream 5454 47447377 ~ 47724843 (+) False LOC110520058
TU300304 other upstream 482975 46831008 ~ 46832244 (+) False LOC110520046
TU300305 other upstream 483015 46831008 ~ 46832204 (+) True LOC110520046
TU300303 other upstream 483085 46831008 ~ 46832134 (+) False LOC110520046
TU299995 other upstream 1130415 46184134 ~ 46184804 (+) True G263859
TU299866 other upstream 1235794 46075484 ~ 46079425 (+) True G263733
TU303780 other downstream 2068880 49510803 ~ 49512475 (+) True G267358
TU303803 other downstream 2112575 49554498 ~ 49555838 (+) True G267381
TU303972 other downstream 2394694 49836617 ~ 49855502 (+) True G267529
TU305367 other downstream 2720378 50162301 ~ 50183026 (+) True hoxd3a
TU305730 other downstream 3160379 50602302 ~ 50604816 (+) True LOC110520146

Expression Profile