RNA id: TCONS_00028945


Basic Information

Item Value
RNA id TCONS_00028945
length 726
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_014647
representative True

Chromosome Information

Item Value
chromosome id NC_007130.7
NCBI id CM002903.2
chromosome length 48449771
location 14153486 ~ 14155781 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCATGGGATTCTCTTCAATATCTTGACTCGTAAACCTGAATTTGCGTACTTCACTTCTCCAGAACCATGCCACTGTAACTTTGAGTGCTTTGTGAGTTTGAAAAACCCAGAGATCACTTGCCCTGCTGCTTTTCAGGTCCTGACGAAAAGCATTCACTTCATGCAGAGCTCACTTTCCCACCAAAATCTGTCTTCCAGTGAGAGGCTCTGTCTTCTTCAGAAACGATGGGTTCCTCTCTTTATTCTGGGTCTTGCGCAAGAGAACATCTCTTTTGAGGTGATGGACTTTCCAGTTGGCAGCATCCTTAGAAACATACTGCTGAGCGGTCAGCAGAAACCAGACGACTGTCCGCTCACTCTGGCTAAAGTGAACAAACTCAAGATGTTTCTAGACAAAGTATGGAGTCTGCAGCTGAGTTTGAAAGAGTATGCCTGTCTTAAGGGAGCTATACTGTTCAGTCAAGTTTTAGATAGCCCTGGACTGAAGAGCTCATTAGTGATAGCAGGACTGCAGGAGGAGTTTGCACATGACCTGCACATGCTTATTCTCTCCCGTCAGCGCTCCGAAGAACACTGGACAATCATGGACGTTTTGTTTACAGCCTGCACTTTACAGATGGAGGCCAGAAGCATGGTGACAGAACTGTTTTTCAGACCCATCATGGGCAAGATGGATATCCAGGAACTTCTCAATGAGATTATCAACAACAATGTAGgattataa

Function

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0007623 circadian rhythm biological_process
GO:0043433 negative regulation of DNA-binding transcription factor activity biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008134 transcription factor binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080403-9 Predicted to enable transcription corepressor activity. Predicted to be involved in circadian rhythm; negative regulation of DNA-binding transcription factor activity; and negative regulation of transcription by RNA polymerase II. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in obesity and type 2 diabetes mellitus. Orthologous to human NR0B2 (nuclear receptor subfamily 0 group B member 2).

Ensembl:

ensembl_id ENSDART00000169232

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030177 lncRNA downstream 86936 14062042 ~ 14066550 (-) True XLOC_014646
TCONS_00028942 lncRNA downstream 220300 13928251 ~ 13933186 (-) True XLOC_014643
TCONS_00028940 lncRNA downstream 230382 13919007 ~ 13923104 (-) True XLOC_014642
TCONS_00030176 lncRNA downstream 696491 13452858 ~ 13456995 (-) False XLOC_014639
TCONS_00028947 lncRNA upstream 32339 14188120 ~ 14190086 (-) True XLOC_014648
TCONS_00030179 lncRNA upstream 1871112 16026893 ~ 16030742 (-) False XLOC_014657
TCONS_00030178 lncRNA upstream 1871112 16026893 ~ 16030742 (-) False XLOC_014657
TCONS_00030180 lncRNA upstream 1871112 16026893 ~ 16030745 (-) False XLOC_014657
TCONS_00030182 lncRNA upstream 1871112 16026893 ~ 16030750 (-) False XLOC_014657
TCONS_00028944 mRNA downstream 191017 13961396 ~ 13962469 (-) True XLOC_014645
TCONS_00028943 mRNA downstream 203255 13939750 ~ 13950231 (-) True XLOC_014644
TCONS_00028941 mRNA downstream 220282 13923600 ~ 13933204 (-) False XLOC_014643
TCONS_00028938 mRNA downstream 230395 13905068 ~ 13923091 (-) False XLOC_014642
TCONS_00028939 mRNA downstream 230395 13905083 ~ 13923091 (-) False XLOC_014642
TCONS_00028946 mRNA upstream 31759 14187540 ~ 14191592 (-) False XLOC_014648
TCONS_00028948 mRNA upstream 747598 14903379 ~ 14970813 (-) True XLOC_014649
TCONS_00028949 mRNA upstream 747835 14903616 ~ 14968192 (-) True XLOC_014650
TCONS_00028950 mRNA upstream 986746 15142527 ~ 15229421 (-) False XLOC_014651
TCONS_00028951 mRNA upstream 988727 15144508 ~ 15177324 (-) False XLOC_014651
TCONS_00028935 other downstream 379017 13733168 ~ 13774469 (-) True XLOC_014640
TCONS_00028926 other downstream 1520223 12633149 ~ 12633263 (-) True XLOC_014634
TCONS_00028921 other downstream 1760728 12386297 ~ 12392758 (-) True XLOC_014630
TCONS_00028910 other downstream 2007721 12134847 ~ 12145765 (-) True XLOC_014624
TCONS_00028954 other upstream 1019062 15174843 ~ 15192646 (-) True XLOC_014651
TCONS_00028962 other upstream 1871638 16027419 ~ 16027490 (-) True XLOC_014658
TCONS_00028963 other upstream 1872675 16028456 ~ 16028590 (-) True XLOC_014659
TCONS_00028964 other upstream 1873527 16029308 ~ 16029443 (-) True XLOC_014660
TCONS_00028972 other upstream 2843846 16999627 ~ 16999742 (-) True XLOC_014664

Expression Profile

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