Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00028982 |
| length | 5629 |
| RNA type | mRNA |
| GC content | 0.37 |
| exon number | 8 |
| gene id | XLOC_014675 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007130.7 |
| NCBI id | CM002903.2 |
| chromosome length | 48449771 |
| location | 17514631 ~ 17658253 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046549 | retinal cone cell development | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0043010 | camera-type eye development | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0000122 | negative regulation of transcription by RNA polymerase II | biological_process |
| GO:0048839 | inner ear development | biological_process |
| GO:0002154 | thyroid hormone mediated signaling pathway | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0009755 | hormone-mediated signaling pathway | biological_process |
| GO:0042671 | retinal cone cell fate determination | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0005515 | protein binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0070324 | thyroid hormone binding | molecular_function |
| GO:0004879 | nuclear receptor activity | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| GO:0003707 | steroid hormone receptor activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ko00260 | Glycine, serine and threonine metabolism |
| ko04080 | Neuroactive ligand-receptor interaction |
| ko04919 | Thyroid hormone signaling pathway |
| ko03000 | Transcription factors |
| ko03310 | Nuclear receptors |
| id | description |
|---|---|
| ZDB-GENE-990415-268 | Enables nuclear receptor activity. Acts upstream of or within regulation of transcription, DNA-templated; sensory organ development; and thyroid hormone mediated signaling pathway. Predicted to be located in nucleus. Is expressed in several structures, including brain; eye; heart; liver; and optic vesicle. Used to study thyroid hormone resistance syndrome. Human ortholog(s) of this gene implicated in several diseases, including breast cancer (multiple); cervix uteri carcinoma in situ; renal cell carcinoma; selective pituitary thyroid hormone resistance; and thyroid hormone resistance syndrome. Orthologous to human THRB (thyroid hormone receptor beta). |
| ensembl_id | ENSDART00000189391 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00030192 | lncRNA | downstream | 159898 | 17353644 ~ 17354733 (-) | True | XLOC_014673 |
| TCONS_00030191 | lncRNA | downstream | 185578 | 17322000 ~ 17329053 (-) | True | XLOC_014672 |
| TCONS_00030190 | lncRNA | downstream | 192751 | 17321542 ~ 17321880 (-) | True | XLOC_014671 |
| TCONS_00030189 | lncRNA | downstream | 236824 | 17275458 ~ 17277807 (-) | True | XLOC_014669 |
| TCONS_00029771 | lncRNA | downstream | 283611 | 17224646 ~ 17231020 (-) | True | XLOC_014668 |
| TCONS_00028994 | lncRNA | upstream | 307469 | 17834204 ~ 17834825 (-) | False | XLOC_014677 |
| TCONS_00029000 | lncRNA | upstream | 424923 | 17951658 ~ 17972730 (-) | False | XLOC_014677 |
| TCONS_00030193 | lncRNA | upstream | 610979 | 18137714 ~ 18139390 (-) | False | XLOC_014680 |
| TCONS_00029772 | lncRNA | upstream | 610979 | 18137714 ~ 18139894 (-) | True | XLOC_014680 |
| TCONS_00029014 | lncRNA | upstream | 784777 | 18311512 ~ 18313300 (-) | True | XLOC_014682 |
| TCONS_00028981 | mRNA | downstream | 129083 | 17377346 ~ 17385548 (-) | True | XLOC_014674 |
| TCONS_00028980 | mRNA | downstream | 209636 | 17292647 ~ 17304995 (-) | False | XLOC_014670 |
| TCONS_00028979 | mRNA | downstream | 209636 | 17292647 ~ 17304995 (-) | True | XLOC_014670 |
| TCONS_00028977 | mRNA | downstream | 209765 | 17288529 ~ 17304866 (-) | False | XLOC_014670 |
| TCONS_00028978 | mRNA | downstream | 211131 | 17292514 ~ 17303500 (-) | False | XLOC_014670 |
| TCONS_00028992 | mRNA | upstream | 161615 | 17688350 ~ 17774884 (-) | False | XLOC_014676 |
| TCONS_00028993 | mRNA | upstream | 218521 | 17745256 ~ 17774875 (-) | True | XLOC_014676 |
| TCONS_00028995 | mRNA | upstream | 308034 | 17834769 ~ 17996336 (-) | False | XLOC_014677 |
| TCONS_00028996 | mRNA | upstream | 311215 | 17837950 ~ 17864213 (-) | False | XLOC_014677 |
| TCONS_00028997 | mRNA | upstream | 311215 | 17837950 ~ 17996180 (-) | False | XLOC_014677 |
| TCONS_00028976 | other | downstream | 303896 | 17208245 ~ 17210735 (-) | True | XLOC_014667 |
| TCONS_00028972 | other | downstream | 514889 | 16999627 ~ 16999742 (-) | True | XLOC_014664 |
| TCONS_00028964 | other | downstream | 1485188 | 16029308 ~ 16029443 (-) | True | XLOC_014660 |
| TCONS_00028963 | other | downstream | 1486041 | 16028456 ~ 16028590 (-) | True | XLOC_014659 |
| TCONS_00028962 | other | downstream | 1487141 | 16027419 ~ 16027490 (-) | True | XLOC_014658 |
| TCONS_00029018 | other | upstream | 890446 | 18417181 ~ 18418763 (-) | False | XLOC_014685 |
| TCONS_00029036 | other | upstream | 1307992 | 18834727 ~ 18834857 (-) | True | XLOC_014693 |
| TCONS_00029037 | other | upstream | 1311676 | 18838411 ~ 18838541 (-) | True | XLOC_014694 |
| TCONS_00029038 | other | upstream | 1314678 | 18841413 ~ 18841543 (-) | True | XLOC_014695 |
| TCONS_00029041 | other | upstream | 1327322 | 18854057 ~ 18855476 (-) | True | XLOC_014696 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| grasscarp (Ctenopharyngodon idella) | CI01000320_03878507_03888507.mRNA | True | 1982 | mRNA | 0.50 | 8 | CI01000320 | 3878300 ~ 3888755 (+) |
