RNA id: TU263831


Basic Information

Item Value
RNA id TU263831
length 758
lncRNA type intronic
GC content 0.45
exon number 1
gene id G230727
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 17999630 ~ 18000387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggatggtgttctcagggtgatgagaggtgttgggtttgcgccagacatagcgttttccttgatggccaaaaagctacattttagtctcatctgaccagagtaccttcttccatatgttggGGGAGTCTctacatgccttttggtgaacaccaaacgtgtttacttatttttttctttaagcaatggctttttctggccactcttccgtaaagcccagctctgtggagtgtacggcttaaagtgatcctatggacagatactccaatctccgctgtggagcattgcagctccttcagggttatctttggtctcgttgttgcctctctgattaatgccctccttgcctggtccgtgtgttttggtgggcggccctctcttggcaggtttgttgtggtgccatattctttcaattttttaataatggatttaacagTGCTCTgagggatgttcaaagtttctgatatgtttgtataacccaaccctgatctgtacttctccacaactttgtccctgacctgtttggagagctccttggtcttcatggtgccgcttgcttggtggtgccccttgcttagtggtgtttcagactctggggcctttcagaacaggtgtatacatactgagatcatgtaacaaatcatgtgacacttagattgcacacaggtggactttgtttaactaattatgtgacttctgaaggtaattggttgcaccagatcttatttaggggattcatagcaaagggggtgaatacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU263826 lncRNA downstream 9169 17990261 ~ 17990461 (-) True G230722
TU263824 lncRNA downstream 10757 17988640 ~ 17988873 (-) True G230720
TU263794 lncRNA downstream 14086 17975245 ~ 17985544 (-) True LOC110505118
TU263792 lncRNA downstream 23725 17975245 ~ 17975905 (-) False LOC110505118
TU263814 lncRNA downstream 26400 17972855 ~ 17973230 (-) True G230710
TU263830 lncRNA upstream 2279 18002666 ~ 18003098 (-) True G230726
TU263836 lncRNA upstream 6680 18007067 ~ 18007309 (-) True G230730
TU263837 lncRNA upstream 8336 18008723 ~ 18009099 (-) True G230731
TU263838 lncRNA upstream 10134 18010521 ~ 18010735 (-) True G230732
TU263851 lncRNA upstream 14095 18014482 ~ 18015331 (-) False G230734
LOC110505118 mRNA downstream 21977 17975160 ~ 17977653 (-) False LOC110505118
XM_021592592.2 mRNA downstream 29779 17968009 ~ 17969851 (-) True LOC110511884
XM_021592602.2 mRNA downstream 34752 17957248 ~ 17964878 (-) False LOC110511898
XM_036970580.1 mRNA downstream 34752 17957248 ~ 17964878 (-) True LOC110511898
XM_021592596.2 mRNA downstream 34794 17957248 ~ 17964836 (-) False LOC110511898
XM_036970588.1 mRNA upstream 32956 18033343 ~ 18048841 (-) True LOC110511860
XM_021592571.2 mRNA upstream 49359 18049746 ~ 18085029 (-) True LOC110511851
LOC110503747 mRNA upstream 93317 18093704 ~ 18154474 (-) False LOC110503747
XM_021592560.2 mRNA upstream 180103 18180490 ~ 18182783 (-) True LOC110511808
XM_021592549.2 mRNA upstream 199671 18200058 ~ 18206177 (-) False LOC110511774
TU263791 other downstream 21721 17975245 ~ 17977909 (-) False LOC110505118
TU262748 other downstream 951286 17045025 ~ 17048344 (-) True G229707
TU262393 other downstream 1149431 16849972 ~ 16850199 (-) True G229380
TU262386 other downstream 1159791 16839389 ~ 16839839 (-) True G229373
TU261050 other downstream 2208465 15787622 ~ 15791165 (-) False G228191
TU263980 other upstream 93369 18093756 ~ 18131054 (-) False LOC110503747
TU263981 other upstream 93369 18093756 ~ 18130086 (-) True LOC110503747
TU264859 other upstream 599343 18599730 ~ 18601875 (-) True G231652
TU265301 other upstream 1158913 19159300 ~ 19282138 (-) True LOC110511176
TU266171 other upstream 1541715 19542102 ~ 19599101 (-) False rims2a

Expression Profile