RNA id: TU291039


Basic Information

Item Value
RNA id TU291039
length 295
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G255445
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39831186 ~ 39831480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTCCCTTTTTggtagtcctcccggttttgacccttgcttgTTTCTGGACTGTACCTGCCTATCTAGATGTCTTGTAGACCGTGACCATTCTACCTGCCTTGACCTCAAgactgcctgccactctgtacctcctggactctgaactggttttgaccttttgcctgtccacgaccattctcttgcctacccttttggattataataaatatcaaagactcaaaccatctgcctcccatgtctgcatctgggtctcgccttgtgcccttataccaTCACCTCATCAAATGTAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291038 lncRNA upstream 1281 39829597 ~ 39829905 (+) True G255444
TU291036 lncRNA upstream 3140 39827820 ~ 39828046 (+) True G255442
TU291028 lncRNA upstream 11242 39819620 ~ 39819944 (+) True G255434
TU291027 lncRNA upstream 12638 39818340 ~ 39818548 (+) True G255433
TU290998 lncRNA upstream 43909 39787003 ~ 39787277 (+) True G255407
TU291041 lncRNA downstream 639 39832119 ~ 39832372 (+) True G255447
TU291053 lncRNA downstream 16290 39847770 ~ 39848121 (+) True G255459
TU291768 lncRNA downstream 41204 39872684 ~ 39872983 (+) True G256055
TU291773 lncRNA downstream 43974 39875454 ~ 39875669 (+) True G256060
TU291858 lncRNA downstream 112060 39943540 ~ 39943767 (+) True G256142
XM_021596887.2 mRNA upstream 48782 39769763 ~ 39782404 (+) False asmtl
XM_036974091.1 mRNA upstream 48782 39769763 ~ 39782404 (+) False asmtl
XM_036974092.1 mRNA upstream 48782 39769789 ~ 39782404 (+) False asmtl
XM_036974093.1 mRNA upstream 48782 39769831 ~ 39782404 (+) True asmtl
XM_021596886.2 mRNA upstream 61760 39745777 ~ 39769426 (+) True LOC110519965
XM_021596895.2 mRNA downstream 608560 40440040 ~ 40452542 (+) False LOC110519969
XM_021596896.2 mRNA downstream 608560 40440040 ~ 40452542 (+) False LOC110519969
XM_021596897.2 mRNA downstream 629681 40461161 ~ 40701455 (+) False dnah7
XM_036974097.1 mRNA downstream 629681 40461161 ~ 40702678 (+) True dnah7
LOC118944668 mRNA downstream 1026817 40858297 ~ 40861180 (+) True LOC118944668
TU290915 other upstream 163098 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 986630 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 1230320 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 1389452 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1738452 38092322 ~ 38092734 (+) True G253834
TU292451 other downstream 608589 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 608589 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 4420589 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 4688939 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 6007441 45838921 ~ 45839480 (+) True G263547

Expression Profile