RNA id: TU291768


Basic Information

Item Value
RNA id TU291768
length 300
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G256055
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 39872684 ~ 39872983 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTGTTTTGCACAATCTAGAAAGGGTCCTTTCTTTATAAGTCAAAGATAACGCTAACAGTCGGTTAAcagttagatagctagctaacattaaccacGAGGTGTGCACGTGTACTTACTAGCTACAatacactgagtgttcaaaacatcgtctttccatgacagactgaccaggtgaaaggtatgatcccttattgatgtcactttttaaatCCATGTCAACCAGTGTAATgggtaggagacaggttaataaagaaggattttcaagccttgagacagttgagtcatggattgtgtatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU291053 lncRNA upstream 24563 39847770 ~ 39848121 (+) True G255459
TU291041 lncRNA upstream 40312 39832119 ~ 39832372 (+) True G255447
TU291039 lncRNA upstream 41204 39831186 ~ 39831480 (+) True G255445
TU291038 lncRNA upstream 42779 39829597 ~ 39829905 (+) True G255444
TU291036 lncRNA upstream 44638 39827820 ~ 39828046 (+) True G255442
TU291773 lncRNA downstream 2471 39875454 ~ 39875669 (+) True G256060
TU291858 lncRNA downstream 70557 39943540 ~ 39943767 (+) True G256142
TU291860 lncRNA downstream 71429 39944412 ~ 39944666 (+) True G256144
TU292008 lncRNA downstream 232163 40105146 ~ 40106342 (+) True G256288
TU292184 lncRNA downstream 385297 40258280 ~ 40260434 (+) True G256457
XM_021596887.2 mRNA upstream 90280 39769763 ~ 39782404 (+) False asmtl
XM_036974091.1 mRNA upstream 90280 39769763 ~ 39782404 (+) False asmtl
XM_036974092.1 mRNA upstream 90280 39769789 ~ 39782404 (+) False asmtl
XM_036974093.1 mRNA upstream 90280 39769831 ~ 39782404 (+) True asmtl
XM_021596886.2 mRNA upstream 103258 39745777 ~ 39769426 (+) True LOC110519965
XM_021596895.2 mRNA downstream 567057 40440040 ~ 40452542 (+) False LOC110519969
XM_021596896.2 mRNA downstream 567057 40440040 ~ 40452542 (+) False LOC110519969
XM_021596897.2 mRNA downstream 588178 40461161 ~ 40701455 (+) False dnah7
XM_036974097.1 mRNA downstream 588178 40461161 ~ 40702678 (+) True dnah7
LOC118944668 mRNA downstream 985314 40858297 ~ 40861180 (+) True LOC118944668
TU290915 other upstream 204596 39659059 ~ 39668088 (+) True LOC110519960
TU290310 other upstream 1028128 38843510 ~ 38844556 (+) True G254816
TU289899 other upstream 1271818 38600487 ~ 38600866 (+) True G254445
TU289648 other upstream 1430950 38441166 ~ 38441734 (+) True G254204
TU289268 other upstream 1779950 38092322 ~ 38092734 (+) True G253834
TU292451 other downstream 567086 40440069 ~ 40452180 (+) False LOC110519969
TU292452 other downstream 567086 40440069 ~ 40452180 (+) True LOC110519969
TU297744 other downstream 4379086 44252069 ~ 44252551 (+) True G261749
TU298041 other downstream 4647436 44520419 ~ 44525408 (+) True G262037
TU299672 other downstream 5965938 45838921 ~ 45839480 (+) True G263547

Expression Profile