RNA id: TCONS_00000260


Basic Information

Item Value
RNA id TCONS_00000260
length 1246
RNA type mRNA
GC content 0.41
exon number 4
gene id XLOC_000147
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 11659861 ~ 11668782 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cgcagatttggttaaccaattagaggaaagtgggcgtttcagcaccgcctacatgtgtaaaatgaattttaaagtcgtttatccgttttcctaccctaaaccaaaaaacgaaaatccagccaaaatctcgttttttcgttttctcgtgagcaaaagaaaaacggaaaaacggccgttttctccatttcctttattccgtttgaaaatggaaaacaaatgaacaaaacgtacacggaccattGACGCCTGGCTTAAACGAGAGGCGCGAATGCCTTTGTTGATTTTACTAGTTGGCATGAACGATTCCGGGacatcaacattcttcaaacaaATACGTCTTATCAACGGAGAGGACTTCAACCTTAAACAACGGCTTGGATTCAGAGAAGCAATTTACGAAAACATCATACAGGGTATGTGGGTGTTGGTCAAAGAACGAAATAAGTTGGGCATTCCTTTGCAAAACTCTGCCAATGAAATACACGAGATATCATTTACATCAGATGACTGCTTGAGAGTGAAATTTACTGAGCCCAGTGCATTTCAGCCCTATGTTGAAGCTGTGGATTCTCTCTGGAAGGATTCTGGGATTCAGGAAACTTATCGCAGGAGCGACTTTAAGGGGCATGAGTATTTTATTTGCGACTCAGTCAAGTACCACTTTGACAATATTCAACGTATTGGCCAACTGGACTATTTACCACACAATCAAGACATTCTTCATGCACGCAGTCGCTGGACAACCCTAGAAGACATGTATTATGTGCTCCGTGATACCCCTTTTGTGGTAGCACAATCATCTATCCTGCCTTTTATTGCAAGGATGAAGTTTAACTTCCGTGACACAACAATACTGTTTATAATTGGATCCAGTGATTATGACCGAATGTTATATGACAGCAACTGCCTTGCTGACTCGTTGAGTATATTCAAATCTATTATCAATCATAAATACTACAGCAGCAGCACCATCATCCTCCTCTTTAACAAAATGGACCTGCTGAGAGAAAAAGTCCAAACTGCAGATATCCGGAAGCATTTTCCTGAGTTTCAAGGTGATCCTCACAGGCTGGAGGACGTGCAGAAATTCTTGGTTCAAAGCTTTAAAATGAGGAAGCTAAAAAACAGCGGGCCAATTTACTACCACATGATCACTGCAGTGGACACAGAGAATATTCGGACTGTGTACAACACCATTAAACATGCAATATTAAGCAAGAACTTCAAAGACTTTTTACAGCTGTAG

Function

GO: NA

KEGG:

id description
ko04010 MAPK signaling pathway
ko04072 Phospholipase D signaling pathway
ko04071 Sphingolipid signaling pathway
ko04022 cGMP-PKG signaling pathway
ko04810 Regulation of actin cytoskeleton
ko04928 Parathyroid hormone synthesis, secretion and action
ko04270 Vascular smooth muscle contraction
ko04730 Long-term depression
ko04361 Axon regeneration
ko05200 Pathways in cancer
ko05163 Human cytomegalovirus infection
ko05130 Pathogenic Escherichia coli infection
ko04147 Exosome
ko04031 GTP-binding proteins

Ensembl:

ensembl_id ENSDART00000054787

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002813 lncRNA upstream 872544 10780928 ~ 10787317 (+) True XLOC_000143
TCONS_00003036 lncRNA upstream 979020 10645364 ~ 10680841 (+) True XLOC_000138
TCONS_00003035 lncRNA upstream 991833 10645264 ~ 10668028 (+) True XLOC_000137
TCONS_00000251 lncRNA upstream 996336 10662312 ~ 10663525 (+) True XLOC_000139
TCONS_00002812 lncRNA upstream 1041931 10617524 ~ 10617930 (+) True XLOC_000136
TCONS_00002814 lncRNA downstream 264535 11933317 ~ 11933676 (+) True XLOC_000152
TCONS_00003037 lncRNA downstream 377710 12046492 ~ 12048509 (+) False XLOC_000155
TCONS_00000280 lncRNA downstream 503540 12172322 ~ 12181039 (+) False XLOC_000159
TCONS_00000284 lncRNA downstream 515715 12184497 ~ 12187708 (+) False XLOC_000159
TCONS_00000285 lncRNA downstream 517368 12186150 ~ 12187708 (+) True XLOC_000159
TCONS_00000257 mRNA upstream 541931 11107688 ~ 11117930 (+) True XLOC_000144
TCONS_00000255 mRNA upstream 883314 10771457 ~ 10776547 (+) False XLOC_000142
TCONS_00000256 mRNA upstream 883314 10771474 ~ 10776547 (+) True XLOC_000142
TCONS_00000254 mRNA upstream 920640 10720294 ~ 10739221 (+) True XLOC_000141
TCONS_00000252 mRNA upstream 963258 10683843 ~ 10696603 (+) False XLOC_000140
TCONS_00000261 mRNA downstream 21578 11690360 ~ 11707665 (+) False XLOC_000148
TCONS_00000262 mRNA downstream 22940 11691722 ~ 11707665 (+) False XLOC_000148
TCONS_00000264 mRNA downstream 42444 11711226 ~ 11733130 (+) False XLOC_000149
TCONS_00000265 mRNA downstream 42721 11711503 ~ 11719021 (+) True XLOC_000149
TCONS_00000266 mRNA downstream 67638 11736420 ~ 11737595 (+) True XLOC_000150
TCONS_00000259 other upstream 190211 11469536 ~ 11469650 (+) True XLOC_000146
TCONS_00000258 other upstream 279250 11380497 ~ 11380611 (+) True XLOC_000145
TCONS_00000253 other upstream 963533 10683995 ~ 10696328 (+) True XLOC_000140
TCONS_00000247 other upstream 1296010 10363720 ~ 10363851 (+) True XLOC_000133
TCONS_00000245 other upstream 1336589 10318077 ~ 10323272 (+) False XLOC_000132
TCONS_00000263 other downstream 22966 11691748 ~ 11695168 (+) True XLOC_000148
TCONS_00000271 other downstream 346334 12015116 ~ 12033278 (+) False XLOC_000154
TCONS_00000272 other downstream 346374 12015156 ~ 12031300 (+) True XLOC_000154
TCONS_00000274 other downstream 377809 12046591 ~ 12047368 (+) True XLOC_000155
TCONS_00000278 other downstream 403139 12071921 ~ 12077478 (+) True XLOC_000157

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_02340225_02344792.mRNA True 2677 mRNA 0.36 4 CI01000300 2338788 ~ 2344976 (+)