RNA id: XM_021602057.2


Basic Information

Item Value
RNA id XM_021602057.2
length 2406
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC110523394
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 20843391 ~ 20851224 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAtaaactgaccctagatcagcgCTCTTCGTCTAACACCAAAACGTATCGCGAGATGTCATATTTTATTGATTTGAAACATGGCGTCGGAAGGAGAAGCGGCCAATGCTTCTGTTGTTGAACCAGAGACCGGGGACGGTGATGCTGGATTTGGGGACTTGACAGGCAACCTGGAGACTGAGTCATCGAATGGCAAAGAGGCCATGGATCCGGGTAGTGAGGGTTTGGAGGCAGCTGACACCCAGACAGGTTCTGGGGACGAGGAGAGCGGCAGGCACCAGGGAGAGGTGGAGCTGCAGTGTGCTCTCTGTATGAAGTGGTTCACCGCCGACACCTTCAGCATTGACACCGCgacgTGTCTGCCTTTCATGACCAACTATGTTTTCCATTGTAACGTGTGTCATCACAGTGGCAACACCTACTTCCTCCGGAAACAAGCCAACCTGAAGGAGATGTGTCTGACTGCTCTGGCTAACCTCACATGGAGCTCCAGGACTCAGGAGGAGCACCCCAAGACTATGTTCTCCAAAGACAAGGACATCATCCCGTTCATTGATAAGTACTGGGAGTGTATGACCACCCGACAGAGACCTGGAAAACTTACATGGCCCAACAACCTAGTCAAGACCATGAGTAAAGAGCGGGATGTGTTCTTGGTGAAGGAGCACCCAGACCCAGGCAGTAAGGACCCAGAGGAGGACTACCCCAAGTTTGGCCTGCTGGACCAGGACCTGGGCAACATTGGACCGTCTTACGACAACCAGAAACAGACCACCGCTGCTCCCACTCCCGGAGGGCTCAACGgTGGTCTGGCCCCTGGCCCAGGTAAAGGTAGAGGAGCCAAGCgtaagcagcagcagcaacaacaggaGGGCGCCACAGCTGGAGCAGCTAAGAGAACACGCAGtgACCCTCTGTTCTCGGCCCAGCGTCTTCCTCCCCATGGCTACCCTCTGGAGCACCCCTTCAACAAAGATGGCTACCGCTACATCCTAGCAGAGCCAGACCCCCACGCCCCCgacccagagaaactagagctgGACTGCTGGGCTGGGAAACCCATCCCCGGAGACCTCTACAGAGCCTGTCTCTACGAGAGAGTACTGCTAGCCCTGCACGACAGAGCCCCACAGCTGAAGATCTCAGATGATCGTCTGACAGTGACAGGGGAGAAGGGTTACTCCATGGTCAGAGCCTCCCACGGTGTCAGGAAAGGATCCTGGTACTTTGAGGTCTCCATCGATGAGATGCCCCCGGACACCGCAGCCAGACTGGGCTGGTCTCAGCCTCTGGGTAACCTGCAAGCCCCCCTGGGCTATGATAAGTTCAGCTACTCATGGCGTAGTAAGAAGGGGACACGGTTCCACCAGTCTGTAGGGAAACACTACTCCTCAGGCTACGGACAGGGAGACACGCTGGGCTTCTTCATAGAACTACCAGATGGCACTGAGACAGCCAAGGCACTGCCGGACACTTACAAGGACAAGGCGCTGATTAAGTTTAAGAGCTACCTGTACTTTGAGGAGAAGGACTATGTGGACAAGGCAGAGAAGAGCCTGAAGACTGTTACCCCCAGCAGGaTGCTGTTCTATAAGAATGGGGTTAACCTGGGTCTGGCCTATGAAAACCTGTTTGAGGGTCTCTACTTCcctgccatctctctctaccgGGGCTGTACGGTTTCAGTTAACTTTGGACCACTTTTCAAACACCCTCCAAAAGACATCAAGTACCAGCCAATGAGTGATATGGGCTGGGGAGCGGTGATCGAACATACACTGGCTGACATGTTGTATCACGTAGAGACGGACGTAGACGGACGACGTAGCCCTCCCTGGGAAGGATAAACGCACACCTCCAgagatcaacacacacacagatggccaGTTGAGTGTTTGGACAGGCATGGAGGAGTCCATTCCATCATTTATAGGTGGGTTGATGTCAACCTGAACATGAACACTTTGCAGTCTCTCTGTGGTGTCCCTTAAACATTGTCATTGGTAATTTAAATCAGCTGTACCCTTCTATTGAACAAGATGTGTGTGATCTAAAATGAGACTTGCTTGTCTGAACAACTCTTTTTGGTGTATGAAGCACTTTAGGTGTTCCAGCACTATAAAATAATGTATGTATGGACAAATTCAAATTCATTGTCCATTTTTGTCAAACACCCCAGATATTCTTAGTTCCAGATATTATTTCTTCAAGCAAATGAACATATTCTGTTTTTATTCATTTCCTGCCAGCTGGTCTCAAGCTAGGGTTCCATACTATTGGCCACAGATCTTCATGCAAATATGATACAAATCTGACTGGTTGCGAATTAGTCTGCGTGgcgacgtagtgcacataaaaataacttttgtgGTTAAATTCCTATGTACCGAATAAAAACCAAAATcaa

Function

GO: NA

KEGG:

id description
K14964 ASH2; Set1/Ash2 histone methyltransferase complex subunit ASH2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429493 lncRNA downstream 35792 20798314 ~ 20807599 (-) True G377850
TU429490 lncRNA downstream 38562 20798872 ~ 20804829 (-) False G377849
TU429488 lncRNA downstream 38562 20799776 ~ 20804829 (-) False G377849
TU429492 lncRNA downstream 38562 20801716 ~ 20804829 (-) True G377849
TU429489 lncRNA downstream 42217 20799776 ~ 20801174 (-) False G377849
TU429539 lncRNA upstream 839 20852063 ~ 20852269 (-) True G377890
TU429544 lncRNA upstream 8845 20860069 ~ 20860378 (-) True G377895
TU429557 lncRNA upstream 62938 20914162 ~ 20914572 (-) True G377907
TU429585 lncRNA upstream 64144 20915368 ~ 20915590 (-) True G377934
TU429586 lncRNA upstream 70133 20921357 ~ 20921802 (-) True G377935
XR_002473444.2 mRNA downstream 791549 20044243 ~ 20051842 (-) True LOC110523392
XM_036977011.1 mRNA downstream 1017857 19621025 ~ 19825534 (-) False LOC110523381
XM_036977010.1 mRNA downstream 1225322 19590144 ~ 19618069 (-) True LOC110523387
XM_021602051.2 mRNA downstream 1225323 19590144 ~ 19618068 (-) False LOC110523387
XM_021602066.2 mRNA upstream 156701 21007925 ~ 21018966 (-) False LOC110523399
LOC110522820 mRNA upstream 309057 21160281 ~ 21162494 (-) True LOC110522820
XM_021602075.2 mRNA upstream 321420 21172644 ~ 21175591 (-) True LOC110523403
XM_021602072.2 mRNA upstream 324924 21176148 ~ 21182979 (-) False tpst2
XM_036977029.1 mRNA upstream 327275 21178499 ~ 21182983 (-) True tpst2
TU429442 other downstream 138251 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 148683 20694096 ~ 20694708 (-) True G377800
TU426081 other downstream 2284224 18558140 ~ 18559167 (-) False G374786
TU426079 other downstream 2284224 18558239 ~ 18559167 (-) True G374786
TU425424 other downstream 2840221 18002820 ~ 18003170 (-) True G374189
TU429645 other upstream 178234 21029458 ~ 21029783 (-) True G377991
TU430076 other upstream 940438 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 1326041 22177265 ~ 22179313 (-) True LOC110523434
TU431801 other upstream 1948476 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 2695976 23547200 ~ 23556543 (-) True LOC110522831

Expression Profile