RNA id: XM_036977029.1


Basic Information

Item Value
RNA id XM_036977029.1
length 2333
RNA type mRNA
GC content 0.48
exon number 9
gene id tpst2
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 21176148 ~ 21182983 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttcattactgcaactctttgtgatgtactgaacacgactggttactcgcatcaatgcctctgtctcgtcatttaacattcaaacagTGACTGAGCATTGCAACCAAAAGCAGTCACAAGAAGCATGCAAAAATAGATGCTATACCCTCAGAACTGGAGCAAGTATATGAGTTATTTGTTCCTAAAGGTGCACTATGCATAAATTGctctgtcatttcctggttgctcaAATTCTAATAggtcacctaatttcagtttgtgaccaaacaagcaagtataatatagagaatcattgtaccatctaaacaacTGTGAAACATATTTTCGCTaatcaaaaatattgtattttcagctgtttgaagttgGCGTACAAAACTGAAAGCAAAAGACACAAAAACTCAAGAacagggaagcatagaaatagtgcacatagaataacagatctaccacttcttagacatGCTTTAAATGAGAATGAAAGATATATAACTCgcttttctatgtgaatttggtaggGTCGCCCCAAAAGtgatattgcagctttaattatGGGTTAGTGTCAGGGGAGATTTGTCATTCGAATTAAATTAAAGTCATCATGGAAGTTGCAAtggtcccactgggcacacactagttgaatcaacattgtttccaagtCATTGCAATgtaattacgttgaaccaacgtggaattgAAGTTGAATTGACATTGTGCCCAGTGGGGTGACTTCTGTCCTTTCTAGCATGGAGATAAAAACAGAATAAGGCTTACTGGGTCAGAGAAATCAGTCCTGACAATgcttcaacctctcctctctttactaaCTACTTCAATCTTCCTTCCGTCCCCATCAACTCACTCTGTTCTGCACCGGGCTTCACACTCAAACTAGAACACCACAGTTCAGCTTCCTCTTCCGTCCGTTAAGAAAGTACCTCTCTACCTTTACTTCAACAAGTGATGCGTGTGTCAGCACGGAGGGTGTTAACAGGGCTCCTGATCCTGGGTGGAATCTCCACCCTGACCCAGTTCCTGCGTTTCTGTCTACCCTGCCGGCAGCCATCCCAGGGTGCGGGCGAACCTGTGACCGTGCTGGTCCGGGACGGGTGGAGGGTTAGTTCTGACGTTCCCCTGGTGTTTGTGGGAGGGGTGCCTCGCTCCGGGACCACCCTGATGAGGGCCATGCTGGACGCCCACCCTGCGGTGCGGTGTGGGGAGGAGACGAGGGTCGTACCCAGGATACTGGGCCTTATGCTGGGCTGGGCTGCTGAGAAGGAGGGGGTCAGCACCAAGGTCCTGGACCGAGCGGTCACTGCCTTCCTCCTTCAAATCATAGCAGGACATGGGGAGCCAGCACCTCTACTCTGCAATAAAGACCCCTTTACTTTGAAGAGCGCTAAGTACCTCGCTCATCTTTTTCCCAAcTCTAAGTTCCTGCTGATGCTGAGAGATGGCCGAGCGGCGGTGTACTCTATGATTTCGCGTCGCGTGACGATCGGTGGATTTGACCTCTCCAGCTATAGGGACTGCCTGGCCAAGTGGAGCCGAGCCACACAGGCCATGCTGACACAGTgcactcaggtgggcaGTAAGAGGTGCCTGGCTGTGAGGTATGAGAGGCTGGTCCTCCACCCTCGCTCCACCCTGCAGACAGTGCTAAAGTTCCTGGGTCTGCCGTGGCACGAGGGGGTTCTGCACCATGAAGAGGCTATAGGAAAACCTGGAGGAGTCTCACTGTCAAAAATGGAACGGTCCACAGACCAGGTGATGAGGCCAGTGAACTTAGACGCTCTGACTCGGTGGGTAGGTCACATGCCCCCAGACGTAATGGCAGACATGGACGCTATCGCCCCCATGCTGGGGAGACTAGGCTACGACCCCAGAGCCAACCCACCTAACTATGGACAGTCTGACCCACAGTTCCTCAACAACACACAAAGGcTTCTGAGGGGAGACTTTAAAACTCCTGTAGCAAGCCTACATCAGAAAGGACGTCCTCTGATGTCCATGAAAGGTTCACAGACAGAGAGGTGACAGGGTCAGCGCCTGGAACAACGGTCACCCCTGACCTATGACCCCTGATTATCCTCTCAGGGAAGACAACAGCATCAACCAAAAGGCTGGTGGCTAAGCACCAAGCACAGTCAGAGGGCATAACCATGCATGTGCTCTAGACCTCATTGATAGGAAGAAGTGAAGTACAATGGAGAAAAGTATATTatattgtttttttacatttccaAAATGTGTTTACTTACCTGAATAGGTTCTCCCACTGCCTCCATTTTTTTGGGGTccttacaaaaataaaataatggccAATCTTCACTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU429736 lncRNA downstream 6573 21171276 ~ 21171926 (-) True G378064
TU429737 lncRNA downstream 8579 21167715 ~ 21169920 (-) True G378065
TU429725 lncRNA downstream 11412 21166883 ~ 21167087 (-) True G378062
TU429724 lncRNA downstream 11634 21166613 ~ 21166865 (-) True G378061
TU429722 lncRNA downstream 12403 21165731 ~ 21166096 (-) True G378059
TU429784 lncRNA upstream 55452 21238435 ~ 21239793 (-) True G378104
TU429749 lncRNA upstream 82583 21265566 ~ 21268240 (-) True G378070
TU429806 lncRNA upstream 94668 21277651 ~ 21292814 (-) True G378124
TU429748 lncRNA upstream 107214 21290197 ~ 21290702 (-) True LOC110522822
TU429839 lncRNA upstream 196606 21379589 ~ 21380165 (-) True G378156
XM_021602075.2 mRNA downstream 2908 21172644 ~ 21175591 (-) True LOC110523403
LOC110522820 mRNA downstream 16005 21160281 ~ 21162494 (-) True LOC110522820
XM_021602066.2 mRNA downstream 159533 21007925 ~ 21018966 (-) False LOC110523399
XM_021602056.2 mRNA downstream 327275 20843391 ~ 20851224 (-) False LOC110523394
XM_036977028.1 mRNA upstream 704 21183687 ~ 21271783 (-) True LOC110522821
XM_036977032.1 mRNA upstream 107183 21290166 ~ 21353239 (-) False LOC110522822
XM_036977033.1 mRNA upstream 107183 21290166 ~ 21353239 (-) False LOC110522822
XM_036977030.1 mRNA upstream 107183 21290166 ~ 21353241 (-) False LOC110522822
XM_036977031.1 mRNA upstream 107183 21290166 ~ 21353241 (-) False LOC110522822
TU429645 other downstream 148716 21029458 ~ 21029783 (-) True G377991
TU429442 other downstream 473359 20704613 ~ 20705140 (-) True G377809
TU429433 other downstream 483791 20694096 ~ 20694708 (-) True G377800
TU426081 other downstream 2619332 18558140 ~ 18559167 (-) False G374786
TU430076 other upstream 608679 21791662 ~ 21791993 (-) True G378359
TU431328 other upstream 994282 22177265 ~ 22179313 (-) True LOC110523434
TU431801 other upstream 1616717 22799700 ~ 22802251 (-) True jmy
TU432173 other upstream 2364217 23547200 ~ 23556543 (-) True LOC110522831
TU432634 other upstream 2526815 23709798 ~ 23711891 (-) True G380610

Expression Profile