RNA id: XM_036977190.1


Basic Information

Item Value
RNA id XM_036977190.1
length 4285
RNA type mRNA
GC content 0.50
exon number 5
gene id LOC110523536
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28141409 ~ 28197809 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAAGAATGCTGAGAGCGCCATCCACCCCGCACCTGCAAACACATACTCGCCCCACTCCTCCACCTCGGACACCTTCCCTTCCATCTGCACACGCAACTCCTGGTCTGGCCGGATGAGTTACCACCCGGTGGACACGATAGGGAGTCCATTCAGGAGAAGTATGGATAGTAGGACCACCTACGGCCGCTCCACTGGCACACCCTCCAGCGGGTTCCGTTCTCAGTCCTGGTCCCGGGCAAGCCCAGGCTCCACGATGACCTCCTCCTACAAGAGGAGCGTCAATGTGCCGGTAGCCAGAGCGTACAGCTCCACACTCCTCAGCTCCGCCGACAGCGTTGATTTCAATCAAACGAACGGAGACTACAAGCGCTCCAACGAGAAAGAGCAGCTCCAGGGGCTCAACGACCGCTTCGCCGGTTACATCGACAAGGTGCACTACCTGGAGCAGCAGAACAGCCAGATCGAAGAGGAGATCCAGACGCTGCGGCAGAAGCAGGTGTCACAATCCCAGCTAGGCGATTTATACGACCAGGAACTCCAGGAGCTGCGCTCCATGCTGGAGCAGATTCACCACGATAAAGCGCAGATCCAGCTCGACACGGACCACGTCGAGGATGACATCCAGAGAATTAGGGACCGCTTCGATGAGGAAGCCCGCATCAGGGATGAGACGGAAGGCATCATCCGGGCGTTGAAAAAAGATATGACCGACTCTGATTTGGTGAAGTCAGAGTTGGAGAAGAAAGTTCAGTCACTGCATGACGAGATTGCCTTTATCCGCAACAACCACGCAGAAGAGGTGAGCGACCTGTTCGCCCAGGTGCAGGCGTCGCAGGTGACCATGGAGAGGAAAGACATCCAGAAGACGGACATCACCGAGGCGCTCCGGGAGATCCGCACCCAGCTCGAGGGCCACTCCAACCAGAACCTGCAGCAGGTGGAGGACTGGTTCATGTGCCGCTATTCCAAGCTCACTGATGCTGCGGCACAAAACAAAGATGCAATCAATTCCGCCCGTGATGAGATAGCAGACTACCGTCGCCAGCTTCAGTCCAAGACCGTGGAGTTAGAGTCTGTCCGTGGAACCAGGGAGTCACTGGAGAGGCAATTGAATGACATCGAGGACCGACACAACAACGACCTGTCCAGCCTGCAGgagaccatccaccagcTGGATAATGAGCTTAAGGGCACGAAGTGGGAGATGGCGCGTCATCTGCGTGAGTACCAGGACCTGCTCAATGTCAAGATGGCCCTCGACATTGAGATTGCTGCATACAGGAAACTCCTAGAAGGTGAAGAGACCCACTTTAGCACTTTCCCCTACCGCCACACCGTCACCTCCTCTAAGAAGTCCAAGTATGAGCCTCCCAAACTGAAAGTCCAGCATAAGTTTGTAGAGGAGATCATCGAGGAGACCAGGGTAGAGGATGAGAAGGATGAGATGGACCAGGCCCTGGCTGAGATGGCCCAGGAGTTTTCTGCCACTCTGGAGGCAGAGGCAacagatgaaggagaggatgagggagaagagggaggagaagaagcagagggagaagggggagagggtgaaTCAGAAGAGGTTGTAGCCTCCACTGAAGCCCAAGTTAGCTCCAGCACACctgctgaggaggaagaggaggacaaagaaggtgatgatgaagaggaagagggagaaaaagaagaagagggtgagaaaggagaagagggtgagGGTGAGAAGGGAGATGAtacagaaggagagggggaattagAGGAGACAGTCCTGTGCTCTAAAGCCCCAGAATCAAAGGCCTCTCCTGACAAAGAGAAggctggagagaaggagggaagcggtggagaagaggagacaggagagggagagggagaagaggagggtgatGATCAAGATGAAGATGCAGGTAGTGACAAAGGATCCAAAGATGGAGATGATAAGGATGAGGAAGATGAGAAGAAAGGAAAGGATGAGAAAGAATACAAAACAGATGAGAAGGCAGCTGTAGCCAAGACAGAGGCTCCCAAAACAGAAGCCCCCAAGAGTGAGGCCCCAAAAGTTGAGGTCCAGAAATCTGAGACCTCAAAGCCCTCCAAGCCAGACTCCCTAAAAGCGGAATCCCCAAAGGCTGGGTCCCCCAAGTCTGAGTCACCAAAAGTTGGATCCCCAAAACATGAATCTCCCAAAGCTGTAACCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTTCTGGATCCCCTAAATCTGAATCACCAAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACTTGCTGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGATCCCCTACTTCTGAATCCCCAAAACCTGCTGGATCCCCTAAATCTGCTGGCTCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTGCTGGATCCCCCAAATCTGAATCCCCAAAACCTTCTGGATCCCCCAAATCTGAATCCCCAAAACCTTCTGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACTTGCTGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGATCCCCTACTTCTGAATTCCCCAAATCTGCTGGATCCCCTCAATCTGAATCCCCAAAACCTGCTGGATCCCCTACTTCTGAATCCCCAAAACCTGCTGGATCCCCTAAATCTGAATCCCCAAAACCTGCTGGCTCCCCCAAATCGGAATCCCCAAAACCTACAGTATCCCCCAAATCTGAATCCCCCAATTTAGGATCCCCCGAGGCAGAGGgtgagaaaggagaagagggtgagGGTGAGAAGGGAGATGATGCCCCCAAACCAGAAGCTCCAATGTCAGAGGCCCCCAAGGCTGCAGAAGAGAAAGTAGACAAAAAGAGTGattcagaggaagagaggaaggtagaAAAGAAAGACGCAGCCATGAACGGAGATGTGGAGAAGATTACCCCAGAGGACAAGGACAAGAAGGATGAGGGTGGGAAAGAGGCAGAGGAGAAGGATGTTATCTCAAATGGAGTGGACGAGAGCCCCACTAAAGATGACCCGGACCAGAAAGATGATCCAAAGGACCAGAAGGTGGTCATCACCAAAACGGTGGAGACCATCACCACTGGAGAGGACGGGGCCAAGCATGTCACCAAATCGGTCACTGTCACCGAGACTGTAAAGGAGTCTGAGGATGTGATGCAGGAGAAGACAGTCTCCAGCAAGAAGATGGAGAAACACTCTTCCCAGTCTGTCAAGGTGGTGACTGAAACTGAGTAATTGCACTCCATCCAACCCACTCAGGAGGAACAAAAATGACACGACAACAAGCAATCAACCCAGAACTAACATAACAAAGAAATCATAGAGCTAGAGCGATGTAATAAAGAGAACCACTCTCAAACATACAGAAAAGCAACGAGAGAAGCCATATGATGTGACAAAGCTAACGTTTAAAAAATGCATGTTGAGAGAAAGCTTTAAATGGGTTTTGCTGCAGATTATATCAGGAAAATGTGATAGTGGGACAGATTATTAATTGTCTTTATGTTTCCCTGCAGTTCATGGGAGGGCTCACGGGTGGGGGCGTCTGCATGCTAGCTCAGGGAGGGAGACCCCTCCGCTCTAACCTGTATGTATGGATGGAAGGTTTACagtttagatactgtatgtggGTGGGAGAGTGATAGAAATGTATGTTCATTCAAATGTTAATTCAAAAAGGGGTGCCTGGGTTGGACGGTCCACTTTAGAGACACATGTTCAAAAGGACTAGCCTTTTTATGTGAAGATACCAACTGAGCCAAAAATGCAATCGTCTACAACACAATATAGTGAAGAATGAGAAAGACAATGGTGCAATGTACTGATGATCATAAACATACAGTACCCGAAGCAACTAAAGCATTAAGAACCTTGAAGAAACTCTGAGCCTTAAACATGCTTTTTATCAGTATCTATTGTGTTTACCTAATGAGTGCAATTGAAAATAAATATGTAAATGCGCACACATACATTCTTGTATGCATAGGATGGACTTGAATTTAAATAGCGAACTTAAATGAGGTGCTACAGTTTGCAATCCCATGTCTTTACTCATCATGAACTATTTCCCAGAAGCATTTGCTCAATAAATGTCATACTGAAATACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438150 lncRNA downstream 20355 28136084 ~ 28136313 (-) True G385743
TU438130 lncRNA downstream 30348 28125886 ~ 28126320 (-) True LOC110522901
TU437971 lncRNA downstream 43916 28111608 ~ 28112752 (-) True G385600
TU438042 lncRNA downstream 53065 28103240 ~ 28103603 (-) True G385657
TU438039 lncRNA downstream 57110 28099324 ~ 28099558 (-) True G385654
TU438165 lncRNA upstream 21990 28198964 ~ 28199355 (-) True G385758
TU438174 lncRNA upstream 36413 28213387 ~ 28213618 (-) True G385767
TU438197 lncRNA upstream 76073 28253047 ~ 28253619 (-) True G385790
TU438514 lncRNA upstream 93111 28270085 ~ 28270413 (-) True G386090
TU438516 lncRNA upstream 96032 28273006 ~ 28273245 (-) True G386092
XM_036977188.1 mRNA downstream 9709 28141509 ~ 28146959 (-) False LOC110523536
XM_036977180.1 mRNA downstream 25365 28125853 ~ 28131303 (-) False LOC110522901
XM_021602314.2 mRNA downstream 63275 28089671 ~ 28093393 (-) True LOC110523533
XM_036977179.1 mRNA downstream 76132 28075780 ~ 28080536 (-) True LOC110523532
LOC118964545 mRNA downstream 110925 28043966 ~ 28045743 (-) True LOC118964545
XM_021602332.2 mRNA upstream 183505 28360479 ~ 28362903 (-) True ndr1
XM_021602333.2 mRNA upstream 227531 28404505 ~ 28406150 (-) False LOC110523544
NM_001124618.1 mRNA upstream 254072 28431046 ~ 28435357 (-) True c7b
XM_021602339.2 mRNA upstream 299756 28476730 ~ 28478364 (-) True gadd45gb.1
XM_021602342.2 mRNA upstream 359313 28536287 ~ 28594967 (-) False LOC110523550
TU437993 other downstream 146591 28009267 ~ 28010077 (-) True G385617
TU435637 other downstream 2157888 25996806 ~ 25998780 (-) True G383422
TU434637 other downstream 2714874 25439021 ~ 25441794 (-) True LOC110523492
TU432686 other downstream 4394861 23759039 ~ 23761807 (-) True G380648
TU432634 other downstream 4444777 23709798 ~ 23711891 (-) True G380610
TU438176 other upstream 37569 28214543 ~ 28214819 (-) True G385769
TU438555 other upstream 174801 28351775 ~ 28354745 (-) True G386126
TU438654 other upstream 313992 28490966 ~ 28491372 (-) False G386222
TU439211 other upstream 826709 29003683 ~ 29004755 (-) True anapc2
TU439206 other upstream 832264 29009238 ~ 29045158 (-) False G386725

Expression Profile