RNA id: TCONS_00031195


Basic Information

Item Value
RNA id TCONS_00031195
length 4118
RNA type mRNA
GC content 0.49
exon number 28
gene id XLOC_015627
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 35854242 ~ 35873590 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTGTCCGGTGTGTGTCGGCTATTATGCATCTTGTACTGTAACACACAAGCATTTTTCCTAAATATTTTGAGCGTCTTATTTTGATTGTCGCCGGAGCGTGTTTCTGAGGCCGTCAGCAATGGCGGACATTAAGAACTTCCTGTATGCTTGGTGTGGAAAAAAGAAACTAACACCGAACTATGACATCCGAGCAgctggaaataaaaacagacagaagTTCATGTGTGAGgtGCGTGTGGAGAGTTACAGTTACATCGGTATGGGAAACTCCACCAACAAGAAGGATGCTCAGTCCAATGCCGCCCGAGATTTTGTGAATTATCTAGTGCGGACAAAAGAAATAAGTCCTGGTGAAGTCCCTGCTCTCGGGGTCAGTGTTCCTGATGGACCGAGTGAAGGAGGTAATGATGATGGTGGCGGATTTGGAAATCTCCCGTCTAACTGTCCACTGCCTCCACATCTGGCTGTGAAGAAGGAGTTAGAATCTTGTGAGGGTTCTGCACCTGTCCCTGGAGTCACAGGTTTAGGCTACTCAGGACGTAATAATGCACCATGGGAGAGAGGAGCTAACCTGCAGGAGTATTACTCCAAGAAAGAGGAGCAGGATGCAAAAGCAACATATGAATCAGAGGAAGTTGATCTGAATGCTGGCCTGCATGGGAACTGGACTCTGGATAATGCAAAGGCCCGTCTGAACCAGTTCTTTCAGAAGGAGAAAAATCAAACCGACTACAAGTATAGCCAAGTGGGCCCTGACCACAACAGGAGTTTTATTGCTGAGATGACAATCTTTGTTAGACAGCTGGGTAGAAGGGTTACTGCTCGTGAGCACGGCTCTACAAAGAAGCTGGCTGCCCAGTCTTGCGCTCTCTCTCTTGTCCGTCAGCTGTACCATTTGGGGGTTATAGAAGCTTACACAGGACAAACTAAGAAAAAAGAAGGAGAAAGCGTAGATGTTTATCCAGTTAATGTCAATGATGATGTCCAACACCAGCTGTACAGTGTTGTGCAGGAACTTGGCATCCACATCCCTCCTCCTCCTCAAGACCCCAACAGTCCAGTGTCTCTGGTGCAAGGGAAATTGGCTCATTTTGAACCCTCTCAAAGGCAGAGCATGGCAGGTGTGGTGCCGTGGTCTCCACCACAGGTCAACTGGAACCCTTGGACCAGCTCCAACATTGACGAAGGACCACTAGCATTTTGCACCCCAGAACAGATCAGCAATGACCTTCTGAATGAGCTCAACTATCAGCTTGAACAGGACCAAAATCTGCAGACGATTCTAACGGAACGAAGTCAGCTACCAGTCAAGAACTTTCAGGAGCAAATCATGTCCACCATTTACAATAATCCAGTGGTCATCATCCGTGGAGCTACCGGCTGTGGAAAGACCACTCAGGTTCCTCAGTACATCCTGGACGAGTTCATTAAGGGAGGCAGAGCTTCCGATTGCAATATCGTTGTTACTCAGCCAAGACGTATCAGTGCTGTTTCAGTGGCAGAACGCGTGTCTTTCGAGAGAGGTGAAGATGTGGGCAAAAGCTGTGGCTACAGTGTGCGCTTTGAGTCTTTCCTGCCCAGACCTCATGCCAGCATCCTCTTCTGCACAGTTGGGGTGTTACTGAGGAAGCTAGAGTCTGGTATCCGTGGGATTAGTCACGTGATCGTGGATGAAATCCATGAGAGGGACATAAATACTGATTTCCTGTTGGTGGTGTTGAGAGACGTGGTCCAGGCTTACCCTGATGTGCGTGTCATCCTCATGTCTGCCACCATTGACACCACCATGTTTAAGGAATACTTCTTCAACTGTCCTGTCATCGAGGTACATGGACGTGCACATCCTGTGCAAGAGTATTTTCTAGAAGACTGCATTCAGATGACTCAGTTTGTACCACCACCAATGGACCGGAAGAGAAAAGATAAAGATGACGAGGGTGGAGATGAGGATGTGAACTGTAATGTCATCTGTGGTTCTGAGTACAGTCCAGAAACCAAGCGTGCCATGTCTCAGCTGAACGAGAAGGAAACCTCATTTGAGCTGATTGAGGCTTTGCTGAAATACATTGAAACTCTGGAAGTACCAGGAGCTGTGCTAGTCTTCCTTCCAGGCTGGAACCTCATCTATTTTATGCAGAAACACCTGGAGATGAACCCACACTTCGGTGGTCACCAATACCGAATCCTGCCCCTTCACTCTCAGATCCCGAGGGAAGAACAGAGGCGAGTGTTCGAGCCTGTGCCAGACGGTGTGACTAAGGTCATTTTGTCTACTAACATTGCTGAGACCAGCATCACCATCAATGATGTGGTCTTCGTACTCGACTCCTGCAaGCAGAAGGTGAAGCTGTTCACTTCTCACAACAATATGACAAACTACGCCACTGTGTGGGCCTCAAAAACCAACCTCGAGCAGAGGAAAGGGCGTGCTGGCCGAGTCAGACCAGGCTTCTGCTTTCACCTGTGCAGTCGGGCTCGTTTTGAAAAACTGGAGACCCACATGACTCCAGAGATCTTCCGTACGCCGCTGCATGAGGTGGCGCTCAGCATTAAATTACTGAGGCTTGGAGGCATTGGGAATTTCCTGTCCAAAGCCATCGAGCCACCACCATTGGATGCCGTTATTGAGGCTGAACATACTCTGAGAGAGCTGGATGCTTTAGACAGTAATGATGAGCTCACTCCACTGGGACGCATTCTGGCCAAACTGCCCATCGAACCACGACTGGGGAAGATGATGATCATGGGATGCATTTTTAAtGTTGGAGATGCAGTTTGCACCATCTCAGCAGCAACCTGTTTCCCAGAGCCCTTCATCAACGAGGGAAAACGCCTTGGCTTTGTTCATAGAAACTTTGCAGGCTCACGTTTCTCCGATCACGTGGCCTTGCTCTCTGTCTTCCAGGCCTGGGATGAAGTTCGGGTGGGAGGTGAGGATGCAGAGATTAGGTTTTGTGAGCACAAGAGGCTGAACATGCCCACATTAAGGATGACCTGGGAGGCCAAAGTCCAGCTGAAAGAGATCCTTGTTAACGTTGGCTTCCCTGAAGaGTGTCTCCTAAATCAGGTGTTTAACAACGTGGGACCAGATAATAACTTGGATTTGGTCATCTCTCTGTTGACGTTTGGTTCCTATCCCAATGTGTGTTACCACAAAGAAAAGAGGAAGATCCTGACTACAGAAGGACGAAATGCTCTCATCCACAAATCCTCTGTCAACTGTCCTTTCAGCAACCATGATTTGAAGTATCCATCTCCATTTTTTGTCTTTGGGGAAAAGATCCGAACTCGAGCCATCTCAGCCAAATCCATGACTCTTGTCAGTCCTCTTCAACTCATTCTGTTCGGCTCAAAGAAGATCACATCCAATGGAGAAGTTGTTGAGCTTGACGACTGGATCAAACTGCAGATTCCTCATGATGTGGCTGCTGGTGTGGCCGGCCTGAGGGCAGGATTGGAGGCGCTGGTGGTGGAAGTGACCAAAGATCCAGAATACATCAGGAATCTGGATCCTCTCAATGAGCGCTTGCTGAACGTCATTCGGCTCGTGTCGAGACCCTCGTCAGCAGGCATCAACCTCATGGCCTCCAACCCACGCTTTGGAGATGGTCCACGTCCACCTAAGATGGCCCGGACTGACTTTGGAGGCGGTGGAGATTTTAGGGGAGGAGGAGGATACAGAGGTGGTGGAGGATAcagaggaggtggaggaggataCAGAGGAGGTGGAGGATATCAGGGTGGTGGGGGAGGATATCGTGGTGGAGGCGGTGGAGGATACAGGGGGTATGGAGGAGGAGGTGGATATAGGGGATCTGGGGGATATAGGGGGTCTAGTGGAGGTGGAGGTTACGGAGGCGGAGGGAGAGGAttcagaggaggaggaggaggaggtggtggtggcGGCTGGGGGGGAAACAGGGGTGGATATTAGAATTGATCGTCTGAGCATGGATATATGCAAGAAGGTAAATTATGTGTAAGTTTGGTCGGTTCtcagtcttttttctttttatttgtaagaaagcatgacaaaaataaaaacattaatgtcATACTGTATACTAATGACAGTAATTTTGGCtaatagttaataaaaaatagctatttGTGACCA

Function

GO:

id name namespace
GO:0009615 response to virus biological_process
GO:0050684 regulation of mRNA processing biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003678 DNA helicase activity molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0043138 3'-5' DNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-070912-171 Predicted to enable 3'-5' DNA helicase activity and RNA binding activity. Acts upstream of or within response to virus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in cytoplasm and nucleolus. Orthologous to human DHX9 (DExH-box helicase 9).

Ensembl:

ensembl_id ENSDART00000134918

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033606 lncRNA upstream 239944 35612555 ~ 35614298 (+) False XLOC_015623
TCONS_00031186 lncRNA upstream 248345 35603637 ~ 35605897 (+) False XLOC_015622
TCONS_00033278 lncRNA upstream 272951 35579580 ~ 35581291 (+) True XLOC_015619
TCONS_00033605 lncRNA upstream 273297 35517875 ~ 35580945 (+) False XLOC_015619
TCONS_00031183 lncRNA upstream 335813 35512002 ~ 35518429 (+) False XLOC_015619
TCONS_00033607 lncRNA downstream 199363 36072953 ~ 36078638 (+) True XLOC_015631
TCONS_00031209 lncRNA downstream 219971 36093561 ~ 36094319 (+) True XLOC_015636
TCONS_00033608 lncRNA downstream 306653 36180243 ~ 36367124 (+) False XLOC_015702
TCONS_00033609 lncRNA downstream 306653 36180243 ~ 36583275 (+) False XLOC_015702
TCONS_00033610 lncRNA downstream 371332 36244922 ~ 36247469 (+) True XLOC_015703
TCONS_00031192 mRNA upstream 2581 35733335 ~ 35851661 (+) False XLOC_015625
TCONS_00031191 mRNA upstream 3564 35732652 ~ 35850678 (+) False XLOC_015625
TCONS_00031193 mRNA upstream 17307 35806672 ~ 35836935 (+) True XLOC_015625
TCONS_00031190 mRNA upstream 122466 35728033 ~ 35731776 (+) True XLOC_015624
TCONS_00031189 mRNA upstream 122471 35615547 ~ 35731771 (+) False XLOC_015624
TCONS_00031196 mRNA downstream 7010 35880600 ~ 35979178 (+) True XLOC_015628
TCONS_00031198 mRNA downstream 119814 35993404 ~ 36001985 (+) True XLOC_015629
TCONS_00031199 mRNA downstream 130791 36004381 ~ 36021246 (+) False XLOC_015630
TCONS_00031200 mRNA downstream 133859 36007449 ~ 36014787 (+) False XLOC_015630
TCONS_00031201 mRNA downstream 141459 36015049 ~ 36021608 (+) True XLOC_015630
TCONS_00031194 other upstream 22797 35831329 ~ 35831445 (+) True XLOC_015626
TCONS_00031167 other upstream 1921241 33927219 ~ 33933001 (+) True XLOC_015607
TCONS_00031163 other upstream 1951787 33902325 ~ 33902455 (+) True XLOC_015606
TCONS_00031162 other upstream 1953730 33900435 ~ 33900512 (+) True XLOC_015605
TCONS_00031160 other upstream 2096674 33756378 ~ 33757568 (+) True XLOC_015600
TCONS_00031197 other downstream 117547 35991137 ~ 35998576 (+) False XLOC_015629
TCONS_00031204 other downstream 214179 36087769 ~ 36087779 (+) True XLOC_015632
TCONS_00031205 other downstream 214841 36088431 ~ 36088479 (+) True XLOC_015633
TCONS_00031206 other downstream 215068 36088658 ~ 36088717 (+) True XLOC_015634
TCONS_00031207 other downstream 216070 36089660 ~ 36090680 (+) True XLOC_015635

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_14266999_14280382.mRNA True 3803 mRNA 0.48 26 CI01000004 14266999 ~ 14280609 (+)
bowfin (Amia calva) AMCG00005061 True 3759 mRNA 0.53 28 CM030140.1 14378708 ~ 14391257 (+)