RNA id: TCONS_00032200


Basic Information

Item Value
RNA id TCONS_00032200
length 508
RNA type mRNA
GC content 0.45
exon number 5
gene id XLOC_016345
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 22970140 ~ 23004355 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCACGTAGCAGGGAAGGAAACGGAGTCTAGCTAGATAACCAATTTGTacagaattaacatatttttgttctttaaaatagACTCTTTGCTTCGACAAATCCATTCAAACGGTGATATCGAGTACAGGATTAAGTCCCGAAGCAGACATCATGGAGGCCTGCCAAATGTCCTGTTCGTTTTATGGGTGCAAGAGGACCTACAATAATCCAGAAGCACTGAATGCTCATCTTCAGGACCATCAGAAGAACACGGCTCAATCTCTTCCAGGTAAAGCTTTCCTGTGCTCTCAAATCGGATGTGATGGCTCATTTAACAACATGCAGCAGCTCATGGAGCATATGAGACACCACTACAAGCCAAATTGCTTTTTTCTGTGTGAGAGCTGCAGGGCCAAGCTGCGTTCTTACCGCACTCTCCTCAAACACCTGCAGACCTGTGCTAAAGTTGCTAAAAACAAGGCTGCAGTAAAGACAGAGCCTGGACCGATACTTGATGCAGACGCCAATG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-571 Predicted to enable metal ion binding activity. Orthologous to human ZNF414 (zinc finger protein 414).

Ensembl:

ensembl_id ENSDART00000134664

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00032195 lncRNA downstream 14249 22986256 ~ 22987491 (-) False XLOC_016345
TCONS_00032193 lncRNA downstream 22162 22974186 ~ 22979578 (-) False XLOC_016345
TCONS_00033820 lncRNA downstream 133020 22857105 ~ 22868720 (-) True XLOC_016341
TCONS_00033819 lncRNA downstream 150035 22845662 ~ 22851705 (-) True XLOC_016340
TCONS_00033818 lncRNA downstream 239285 22758806 ~ 22762455 (-) True XLOC_016339
TCONS_00033821 lncRNA upstream 20959 23025245 ~ 23026907 (-) False XLOC_016346
TCONS_00033822 lncRNA upstream 20959 23025245 ~ 23027062 (-) True XLOC_016346
TCONS_00032201 lncRNA upstream 80353 23084639 ~ 23087324 (-) True XLOC_016347
TCONS_00032206 lncRNA upstream 376010 23380296 ~ 23383634 (-) False XLOC_016350
TCONS_00032207 lncRNA upstream 378356 23382642 ~ 23384255 (-) True XLOC_016350
TCONS_00032192 mRNA downstream 8107 22970140 ~ 22993633 (-) False XLOC_016345
TCONS_00032194 mRNA downstream 8139 22979932 ~ 22993601 (-) False XLOC_016345
TCONS_00032188 mRNA downstream 35613 22931159 ~ 22966127 (-) False XLOC_016344
TCONS_00032202 mRNA upstream 160964 23165250 ~ 23172708 (-) True XLOC_016348
TCONS_00032203 mRNA upstream 291129 23295415 ~ 23349116 (-) True XLOC_016349
TCONS_00032204 mRNA upstream 375115 23379401 ~ 23390779 (-) False XLOC_016350
TCONS_00032205 mRNA upstream 375216 23379502 ~ 23391266 (-) False XLOC_016350
TCONS_00032208 mRNA upstream 402498 23406784 ~ 23411368 (-) True XLOC_016352
TCONS_00032199 other downstream 370 22994021 ~ 23001370 (-) False XLOC_016345
TCONS_00032186 other downstream 104339 22897285 ~ 22897401 (-) True XLOC_016343
TCONS_00032172 other downstream 567194 22434430 ~ 22434546 (-) True XLOC_016331
TCONS_00032140 other downstream 2244041 20757582 ~ 20757699 (-) True XLOC_016303
TCONS_00032138 other downstream 2297217 20702226 ~ 20704523 (-) False XLOC_016302
TCONS_00032238 other upstream 1256931 24261217 ~ 24261296 (-) True XLOC_016372
TCONS_00032244 other upstream 1274553 24278839 ~ 24280795 (-) False XLOC_016373
TCONS_00032251 other upstream 1307481 24311767 ~ 24317208 (-) False XLOC_016374
TCONS_00032254 other upstream 1309459 24313745 ~ 24317205 (-) False XLOC_016374
TCONS_00032255 other upstream 1309477 24313763 ~ 24317224 (-) False XLOC_016374

Expression Profile

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