RNA id: TCONS_00032671


Basic Information

Item Value
RNA id TCONS_00032671
length 786
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_016639
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 36990024 ~ 37043905 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGCGCGAACCTGGCCCTTTAAATTACCTCCACAATCACTGTAGACGAGACAAGTGAAGTTACCTGGAGTTTCCTGAGCCAGCTCTAGTCTACAGCATCTCCATCATCAAGAAAGCAGCTGTAGATTGCATACAaatTTTCTTCTTTTACTTGGCTCAATAACCGATGGCAGAGAATGTCCACGACTAATAACATAGCCCAGGCCAGGAAGTTGGTGGAGCAGCTGAGGATCGAGGCAGGCATCGAGCGTATTAAGGTGTCGAAGGCTGCTGCAGACCTCATGAGTTACTGTGAGCAGCACGCCCGCAGTGACCCTCTGCTGGTCGGGGTTCCCACCTCAGAGAACCCGTTTAAAGACAAGAAGCCTTGCATCATTCTATAGCTACTCTGTCTAGCCCAGCTATCTCAGTCCCACTTTAACCGATGCCCATCCCCAATGGGCGATTTAATCCAACACTTCTTTTTACCTGGGATCCACAGTATTCTCCAGAAAATAAGCGCCACACTCTcttggttaaaaacaaaataggGGCAATATCTGTATACCTAGCGTTCATGTAGCCTGGCGTTGAGTGAATCTATATGAATGAATCCACGCATTCATGCGTATAGATGCACTTAACATGAGGTGGCAGATTTCGAATTTGTAAACTATTTCAAAAGCTTACACAGAGACTGAGAGACGCTCCAGCATGTTTTTCAGTGCAGCGGCTGACCTTGTTACCATAGGTGATGGAGGAGAGTAGAGGAAGACAGTCATGTTTCTGCTGACTGACTAGCTGGCTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031680 G-protein beta/gamma-subunit complex cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0031681 G-protein beta-subunit binding molecular_function

KEGG:

id description
ko04014 Ras signaling pathway
ko04371 Apelin signaling pathway
ko04151 PI3K-Akt signaling pathway
ko04062 Chemokine signaling pathway
ko04926 Relaxin signaling pathway
ko04724 Glutamatergic synapse
ko04727 GABAergic synapse
ko04725 Cholinergic synapse
ko04728 Dopaminergic synapse
ko04726 Serotonergic synapse
ko04723 Retrograde endocannabinoid signaling
ko04740 Olfactory transduction
ko04713 Circadian entrainment
ko05200 Pathways in cancer
ko05170 Human immunodeficiency virus 1 infection
ko05163 Human cytomegalovirus infection
ko05167 Kaposi sarcoma-associated herpesvirus infection
ko05032 Morphine addiction
ko05034 Alcoholism
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040718-93 Predicted to enable G-protein beta-subunit binding activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to act upstream of or within signal transduction. Predicted to be located in plasma membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in central nervous system and retina. Orthologous to human GNG7 (G protein subunit gamma 7).

Ensembl:

ensembl_id ENSDART00000131834

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033886 lncRNA downstream 56332 36932699 ~ 36933692 (-) False XLOC_016638
TCONS_00032665 lncRNA downstream 84630 36894877 ~ 36905394 (-) False XLOC_016635
TCONS_00033885 lncRNA downstream 84945 36886743 ~ 36905079 (-) False XLOC_016635
TCONS_00032664 lncRNA downstream 88253 36894877 ~ 36901771 (-) False XLOC_016635
TCONS_00033383 lncRNA downstream 90884 36895025 ~ 36899140 (-) True XLOC_016635
TCONS_00032679 lncRNA upstream 93128 37136668 ~ 37140483 (-) True XLOC_016643
TCONS_00033887 lncRNA upstream 110219 37153759 ~ 37155791 (-) True XLOC_016644
TCONS_00033888 lncRNA upstream 113661 37157201 ~ 37157600 (-) True XLOC_016645
TCONS_00033889 lncRNA upstream 128268 37171808 ~ 37172825 (-) True XLOC_016646
TCONS_00032690 lncRNA upstream 326602 37370142 ~ 37372386 (-) True XLOC_016650
TCONS_00032670 mRNA downstream 56552 36932796 ~ 36933472 (-) True XLOC_016638
TCONS_00032669 mRNA downstream 57771 36920684 ~ 36932253 (-) True XLOC_016637
TCONS_00032668 mRNA downstream 64463 36917613 ~ 36925561 (-) False XLOC_016637
TCONS_00032667 mRNA downstream 71315 36914408 ~ 36918709 (-) False XLOC_016637
TCONS_00032666 mRNA downstream 75743 36907136 ~ 36914281 (-) True XLOC_016636
TCONS_00032673 mRNA upstream 15764 37059304 ~ 37059966 (-) True XLOC_016640
TCONS_00032674 mRNA upstream 45822 37089362 ~ 37098785 (-) False XLOC_016641
TCONS_00032675 mRNA upstream 48747 37092287 ~ 37103622 (-) True XLOC_016641
TCONS_00032676 mRNA upstream 79798 37123338 ~ 37134169 (-) False XLOC_016642
TCONS_00032677 mRNA upstream 80911 37124451 ~ 37134198 (-) False XLOC_016642
TCONS_00032658 other downstream 316105 36670656 ~ 36673919 (-) False XLOC_016631
TCONS_00032657 other downstream 318866 36664770 ~ 36671158 (-) False XLOC_016631
TCONS_00032643 other downstream 657693 36332018 ~ 36332331 (-) True XLOC_016617
TCONS_00032642 other downstream 661913 36327607 ~ 36328111 (-) True XLOC_016616
TCONS_00032641 other downstream 665028 36324496 ~ 36324996 (-) True XLOC_016615
TCONS_00032691 other upstream 361811 37405351 ~ 37409157 (-) True XLOC_016651
TCONS_00032743 other upstream 1160401 38203941 ~ 38204793 (-) False XLOC_016682
TCONS_00032764 other upstream 2019214 39062754 ~ 39068546 (-) False XLOC_016693
TCONS_00032769 other upstream 2327271 39370811 ~ 39370927 (-) True XLOC_016694
TCONS_00032776 other upstream 2692012 39735552 ~ 39752556 (-) True XLOC_016698

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU19436 True 287 lncRNA 0.31 1 CI01000001 8568403 ~ 8568689 (+)
tiger barb (Puntius tetrazona) TU19436 False 1258 lncRNA 0.44 4 NC_056700.1 17163093 ~ 17183417 (-)
mexican tetra (Astyanax mexicanus) TU19436 True 286 lncRNA 0.49 2 NC_035898.1 29607878 ~ 29613773 (+)