RNA id: TCONS_00033997


Basic Information

Item Value
RNA id TCONS_00033997
length 976
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_016955
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55639371 ~ 55663975 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taacaaacaaaaaaggagAAGAAAGATTTCTGCCTTTCATCTCAGACACTGAGACTGCCCCAGCATGACAgctggatttttgttttgttgtgttttttggctgtgtttactgtagtaaaggcttTCAGCGAGACTTCTGTGTTCAGAAGCGTGATTAATGAGAAAGGCATTGTGTGCGCGCTCAAAGGCGCATTATCATGATGATTGTGCGCGCGCAGCGGGTTTGTCTAAACGCGGACAGCAGGCGCCAGTCTCACCTGAGCCCAGGACTCTCTCCTCTCACATCTGAGCCTCGCTCCTCGCCGCATTCAGGTGTTGAGATTGTCGTCACTGGTGTTGGGAAAGGTATTTGAGGAATATGCCGTCATTCTGATTTCCACAGAAGTCTGCAGGAAATATATCCTGGTCTTTTTTTAGTGGTCGGTTGGACTTAATCTCTCATCTGCTCAGAGTGTCTCAGGAAGCCCGTTTGGCCCCATTTCCTGCACACACGCGGACAGATTCGCCAGGAATCGGAGAATGATTGCATTGAGGAGCCCGGCCTCCGTAAGGAAAACACAAGACGGCTGAAAAATGAAAAACAGAGTCGGTCTGGCACGTGCGAGGAATTCAAAGGCCTGGACAAACTCCAGCTCTCGTTTCACTTTGCTAGAAATATTTGGGGACAGTTTTGGGAACAAACTGGCTTTTTTCCCTACTTTTCAATGCACCTGAGAGCTGCACTGCATGTAATTGCATATATAGACACAACGTCATGACAGAAATGTTGGATCTGATTATTAAGTGAGGTTTATTGTCTGCACATGCTTTGGAGTAGTGTTACATAATAAGCGTCAAATTGCATAATTGCATCTTTACTTGATAGCGTGTTGCTAATTATATAACACGTTTTGTTTATAAGAAGCACATGCATCCGCACAAAACATGATGACTGGCAAAACATGAGGATGTCATCAGCGCACGTGATGCAGAATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033992 lncRNA downstream 420360 55215186 ~ 55224575 (-) False XLOC_016952
TCONS_00033982 lncRNA downstream 420394 55215186 ~ 55224541 (-) False XLOC_016952
TCONS_00033421 lncRNA upstream 20693 55684668 ~ 55727240 (-) False XLOC_016956
TCONS_00033422 lncRNA upstream 20769 55684744 ~ 55727240 (-) False XLOC_016956
TCONS_00033110 lncRNA upstream 61593 55725568 ~ 55751669 (-) False XLOC_016956
TCONS_00033423 lncRNA upstream 63699 55727674 ~ 55749321 (-) False XLOC_016956
TCONS_00033424 lncRNA upstream 63699 55727674 ~ 55751698 (-) False XLOC_016956
TCONS_00033109 mRNA downstream 307350 55305342 ~ 55337585 (-) True XLOC_016954
TCONS_00033106 mRNA downstream 327900 55300425 ~ 55317035 (-) False XLOC_016954
TCONS_00033107 mRNA downstream 327900 55300426 ~ 55317035 (-) False XLOC_016954
TCONS_00033104 mRNA downstream 346860 55270566 ~ 55298075 (-) False XLOC_016953
TCONS_00033111 mRNA upstream 87991 55751966 ~ 55779927 (-) True XLOC_016957
TCONS_00033112 mRNA upstream 119921 55783896 ~ 55797318 (-) True XLOC_016958
TCONS_00033113 mRNA upstream 169450 55833425 ~ 55853943 (-) False XLOC_016959
TCONS_00033114 mRNA upstream 169450 55833425 ~ 55861351 (-) True XLOC_016959
TCONS_00033115 mRNA upstream 226698 55890673 ~ 55903520 (-) False XLOC_016960
TCONS_00033108 other downstream 330725 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033102 other downstream 917509 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033081 other downstream 3794664 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 3887825 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033116 other upstream 229763 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 272399 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 378537 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033134 other upstream 1394103 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033137 other upstream 1439426 57103401 ~ 57103485 (-) True XLOC_016974

Expression Profile

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