RNA id: TCONS_00033115


Basic Information

Item Value
RNA id TCONS_00033115
length 3541
RNA type mRNA
GC content 0.43
exon number 3
gene id XLOC_016960
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55890673 ~ 56003820 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCTCGATCTGAGCTGCAGAATCCACAGCACATCTCTCAGTGTTGGCAGGTCTTCAGAGGGCAGCAAATAAAGGAGAAACACATGCAGTAAGAGACAGAGATATATACAAAGACCATGGCGTTCCTTCTGCAGCAGATGCTGGGTGATAAACTGAAGAACATGACCGGAGGAAACAGTGAAGAAGATGAAGATGGCGGAGGAAAAGAGACGGCCGCGTCTAAAGGCATGAGCAGAGAAGAGTTCGAGGAGTATCAGAAACAGCTCATCGAGGAGAAGATCACCAGAGACAAGGAGTTTGCAACAAAAAAAGCAGAGAGAGCAAACCTTCGAGTGCTGCTGCGAGACAAATACAGACTCCCACAGAGCGCACAAGACGACGCCACCGTACAGATGGCCGGAGATGACCTGGACATTCCTGAGGAGCTGGCAAAAATGGTGGATGAAGAGGAAGAGCAGGAGGAGCTAAATGACTCTTTTCTGGGGAAACTACAAAACATGGACGTGGACTTTGACTCAATCAAGGCGAAAGCTCAGAGCACCATGACTGAGGTCAAACAGGCAGCGGAAGAAAAATGTGTCTTGATGTGACGGTGATTCGGTTACAATACTGTGGATCTGGAGGATTTCTTTAGTAGTTTCTTCATTTAAAGTTAagctatggacccttttcacatttcagaGTTTTTCAGCAGCAAATTCGTAATAGTTGGTAAACTTGGAGTGCAGCTAATGTGAGAGTACAACAAATGActattttacaatcctatttgctgaaataataaaagaaaaactcaacgatggtgttatcaagactttcagaaaaataatgtgagactgatgacgacagccagaagagagaacgtCAGATTTAggtcgtactcacactatgtacagttgcctcgaaccgggccaaagcacgattgtcccccctcccgtctcccccgacggcccgcactcacattacaatcaggcctgggcacgcttacgtcatcgatgctgcgctgttcagtaaacGCTCTCGCTCAGCTCAGTGGACATTTCTCTAGTTTTATCGATTTAGTTGTTttttatgcagtgacatgcagtcaaatatttcgccaaacagtccttagggatgcggtgacacgcagtcagatatttcgccgaacagattcgccacttttggcgctcataaacaatcataaagctctcgtgctgcaggaatgaggaggtctgctgaaggtgcagctgttgtgcagtgaggggtttgcgtctttaataaactatggcagtttgcgttcactgaacagtaagaatgattaataaatccatatgaaacagccccttaaagtcacgtctcgctttcagtttcgggctttggtgcgttttgcactcatacacaagcgtaccgcgccaaagcccaagtgaaccgggctccgATTCAGCGAACGGGCCTAGGCACCGTTGCTCGTGTTTTCCAACAAcgtttaaaggctgatttatacttctgcgtctacCGCACGCATATGCTACACCGCAGCCTACGCATTGACACATGGCCCTACGCCGTGGCCTTCGTCATCGCTGACATGCACCTTTCAAAAAAAGGTAGCTACACGTCACatcgacgcatagcgcaagctctataattggtcggcttggcagcgctgacgagtctgggcaacACCTGGCCGctccaatggagcgattgtttaaaagtgtggagtcccgtgaaggagctccggatggaaagttttgtttagtgtttacctcatatttaaagttgttgcacgtccgccggttactgcctcaaaatgagcgagattgagtcacttgtacattcaggaagtgttcaggaaaaacaaaacaccagcgaagaaacacagaggaacatttacacctcacttccaactagcgtttcggaagtgttaatgcagaccaacagagacagcgcgcagaagtataaatgcacagctacatgtgtttcatgcgccgtgggtcacactGATCActagacgcagaagtataaaccaggcttaacgcctcatgactaaataaagaacgtcaatgtgatcgtgcacaagAACGCGCAAAACGCCAAGTGCAAAAGtgtcaattaaaaagaaaaacacctCATGCTCGTCTTTGTTTTGAGGCACCAtgttaaaaccttctccaccaatacGTTAGACACTTTTGTTAACGTTTacgagctgctgaagttacagtaaacagcacttggaggcgctcaagcgcaaaactgtcaatgcgagcgcacactgAAGAAGAACGTGCACTggtaaacaataatcatttcttcatcactagagctggagctgctgctttaACCATAACAACAAGCgagtgtcagaagcttaaagttgtgtagcgccgtctaacatcaaggagtggttttgcatactcttctgatCGACGCCAGTGAAAAATCGATTGTGTTCGAATAATGAAAAACGTCTTGAAAAACATTGACATCTGTCTTGTGAAAATGGTCCATATTTGTAAAATGCTTTTGGTCAGTGTCGGAAAACACacttgcagccaatcagcagtaaggggcGTGTCTAGTCATTATAGCAATATAAAAAGAGGGTGGAGTCTTTCCTGGGttatgggcttttttttttttttggttaacatCACTGGGAAAAATTGCTCAGTGCTAACCTATATTggttaataaaaaaagagaatatttcactttaattaaaatacacCCCTAATTTAATCATCCTCCAGTCATTACACATCTGACTTTCAGATATTCTGATGTACAACTTTTGTATCATATACTGTTGAAATGACAAATGCATTCAAGCTTATTTCTGCCGtggaattaaaaaagaaaaagctatttatacaaatatttatatatattctgtATTAGATGTAAACATCTAAAGAATTatgtaaatgttgaattatttattaacatgtatgtgtatatacttctatacatgtatataaatatgcacatgcacagtacacacacacatatacaatatacacacatacatatactgtatgtatatatttatgttgtatgtatgcatgtatgtatgtatgtatgtatgtatttctgggtgacacagtgggtagccttgttgcctcacagcaagaaggtcgctggtttgagccctgccTGGGTCAgttatcatttctgtgtggactttgcatgttctcaccgtattggcgtgggtttcctccatccaaagacatgtgctgtttgtgcttttaagccttttGAGCGTAAACACCATTTTGCTTTTTGTTCCTTTtgtctgattggatgttgtgagcatgtgaTGTTTTCGTTTtatggtaacaaccagtacatcGAAGAGACGGCAACATGGCAGCAACCTCAAATTATGAGGCTTAAAGACAACGTCTGTTTCTAATACCTTTGAAGCAGACATTAATGTGCGTACAACACAACAAAAACTATTCATtcatgttttgcacagtttgtcgtcagtttggcaagtcagccaccttttgttgaATAATTCAGAACTGCAATAAAgtatctgcacattttcc

Function

GO:

id name namespace
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0046928 regulation of neurotransmitter secretion biological_process
GO:0006836 neurotransmitter transport biological_process
GO:0043195 terminal bouton cellular_component
GO:0031201 SNARE complex cellular_component
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-101018-1 Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to act upstream of or within exocytosis and neurotransmitter transport. Predicted to be located in synapse. Predicted to be part of SNARE complex. Predicted to be active in terminal bouton.

Ensembl:

ensembl_id ENSDART00000128828

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033424 lncRNA downstream 138975 55727674 ~ 55751698 (-) False XLOC_016956
TCONS_00033110 lncRNA downstream 139004 55725568 ~ 55751669 (-) False XLOC_016956
TCONS_00033423 lncRNA downstream 141352 55727674 ~ 55749321 (-) False XLOC_016956
TCONS_00033425 lncRNA downstream 141352 55739818 ~ 55749321 (-) True XLOC_016956
TCONS_00033421 lncRNA downstream 163433 55684668 ~ 55727240 (-) False XLOC_016956
TCONS_00033119 lncRNA upstream 99372 56002892 ~ 56003820 (-) True XLOC_016960
TCONS_00033122 lncRNA upstream 156880 56060400 ~ 56095003 (-) False XLOC_016963
TCONS_00033999 lncRNA upstream 221657 56125177 ~ 56129369 (-) True XLOC_016964
TCONS_00033426 lncRNA upstream 738618 56642138 ~ 56655769 (-) False XLOC_016969
TCONS_00033427 lncRNA upstream 905772 56809292 ~ 56824959 (-) False XLOC_016971
TCONS_00033114 mRNA downstream 29322 55833425 ~ 55861351 (-) True XLOC_016959
TCONS_00033113 mRNA downstream 36730 55833425 ~ 55853943 (-) False XLOC_016959
TCONS_00033112 mRNA downstream 93355 55783896 ~ 55797318 (-) True XLOC_016958
TCONS_00033111 mRNA downstream 110746 55751966 ~ 55779927 (-) True XLOC_016957
TCONS_00033109 mRNA downstream 553088 55305342 ~ 55337585 (-) True XLOC_016954
TCONS_00033118 mRNA upstream 76707 55980227 ~ 56002115 (-) True XLOC_016961
TCONS_00033121 mRNA upstream 156880 56060400 ~ 56095275 (-) True XLOC_016963
TCONS_00033123 mRNA upstream 221654 56125174 ~ 56131312 (-) False XLOC_016964
TCONS_00033124 mRNA upstream 435538 56339058 ~ 56348727 (-) True XLOC_016965
TCONS_00033125 mRNA upstream 453132 56356652 ~ 56387041 (-) False XLOC_016966
TCONS_00033108 other downstream 576463 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033102 other downstream 1163247 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033081 other downstream 4040402 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 4133563 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033117 other upstream 32854 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 138992 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033134 other upstream 1154558 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033137 other upstream 1199881 57103401 ~ 57103485 (-) True XLOC_016974
TCONS_00033145 other upstream 1365261 57268781 ~ 57269158 (-) False XLOC_016979

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000075_00190821_00197570.mRNA True 1068 mRNA 0.42 3 CI01000075 190566 ~ 197909 (+)