RNA id: TCONS_00033424


Basic Information

Item Value
RNA id TCONS_00033424
length 854
lncRNA type inter_gene
GC content 0.46
exon number 6
gene id XLOC_016956
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 55684668 ~ 55751698 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGAAACTGCTCAAGACATCACAGGACGAGATGGACCAGACCCGAAGTGAGCTGAGTCTGATCCAGGAGAGCCAGCGGGAGCTCAATAAGAGCATCGAGCGCTACAGTAAGGCTCTGACTGAAAACATGAGTCTGACGGACCTGGAGCAGATCATTGCTGAGGAGGagaacaacagcagcagcagcagcagcattagCAGCAGCACTGAAGCCAGGgaggatTCATTGGTTAAATCCAGGATGGCCATGTTTAACAGTGGTGGCTCTAAAGCACTCGGTTCAGACCCTTTCCAGAGCGAAGACCCCTTCAAAAGCGACCTCTTCAGTAAAGCTGATCCTTTTGGAGGAGATCCCTTCAAGCAGAACGACCCATTTAAAGACCCCTTTGCTAATTCTGATCCCTTCGGAGAAAGTTCATCAAGTCAACTCAagGCCAGTCCTTTCACCAGACGAATCAGCCAGACGTCAATGAGTCCAAAACCCAAAGACTCGGATCCGTTTGCTGCGTCAGACCCGTTCAGTGGCGACGCTTTTGGAGGGAAAGGAGGCTTCGCTGATTTTTCTCAAATGTCAAAGGTATGTCTAAAACAAATCTGAAAGCTAGAGTGTAAAATAgtttcagtcacacacacatacacaattacacacacacacatatatacaggtacacataaacatttaaatagacacatataaacacacacacacatacatacagacagacacgtaaacgcacacaaacatacacacagatgcacacaatTGTACATAATcgaccacatacacacacatagtcACACGCAGACACTCACAAATACATGTTAACAtacccaaatacacacacacacaaacaca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033421 lncRNA downstream 434 55684668 ~ 55727240 (-) False XLOC_016956
TCONS_00033422 lncRNA downstream 434 55684744 ~ 55727240 (-) False XLOC_016956
TCONS_00033998 lncRNA downstream 63699 55644935 ~ 55663975 (-) False XLOC_016955
TCONS_00033997 lncRNA downstream 63699 55644935 ~ 55663975 (-) True XLOC_016955
TCONS_00033420 lncRNA downstream 63939 55644723 ~ 55663735 (-) False XLOC_016955
TCONS_00033119 lncRNA upstream 251194 56002892 ~ 56003820 (-) True XLOC_016960
TCONS_00033122 lncRNA upstream 308702 56060400 ~ 56095003 (-) False XLOC_016963
TCONS_00033999 lncRNA upstream 373479 56125177 ~ 56129369 (-) True XLOC_016964
TCONS_00033426 lncRNA upstream 890440 56642138 ~ 56655769 (-) False XLOC_016969
TCONS_00033427 lncRNA upstream 1057594 56809292 ~ 56824959 (-) False XLOC_016971
TCONS_00033109 mRNA downstream 390089 55305342 ~ 55337585 (-) True XLOC_016954
TCONS_00033106 mRNA downstream 410639 55300425 ~ 55317035 (-) False XLOC_016954
TCONS_00033107 mRNA downstream 410639 55300426 ~ 55317035 (-) False XLOC_016954
TCONS_00033104 mRNA downstream 429599 55270566 ~ 55298075 (-) False XLOC_016953
TCONS_00033111 mRNA upstream 268 55751966 ~ 55779927 (-) True XLOC_016957
TCONS_00033112 mRNA upstream 32198 55783896 ~ 55797318 (-) True XLOC_016958
TCONS_00033113 mRNA upstream 81727 55833425 ~ 55853943 (-) False XLOC_016959
TCONS_00033114 mRNA upstream 81727 55833425 ~ 55861351 (-) True XLOC_016959
TCONS_00033115 mRNA upstream 138975 55890673 ~ 55903520 (-) False XLOC_016960
TCONS_00033108 other downstream 413464 55305089 ~ 55314210 (-) False XLOC_016954
TCONS_00033102 other downstream 1000248 54727306 ~ 54727426 (-) True XLOC_016947
TCONS_00033081 other downstream 3877403 51850157 ~ 51850271 (-) True XLOC_016923
TCONS_00033075 other downstream 3970564 51752075 ~ 51757110 (-) False XLOC_016919
TCONS_00033116 other upstream 142040 55893738 ~ 55982701 (-) False XLOC_016960
TCONS_00033117 other upstream 184676 55936374 ~ 56003795 (-) False XLOC_016960
TCONS_00033120 other upstream 290814 56042512 ~ 56042630 (-) True XLOC_016962
TCONS_00033134 other upstream 1306380 57058078 ~ 57061793 (-) True XLOC_016972
TCONS_00033137 other upstream 1351703 57103401 ~ 57103485 (-) True XLOC_016974

Expression Profile

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