RNA id: TCONS_00034090


Basic Information

Item Value
RNA id TCONS_00034090
length 2535
RNA type mRNA
GC content 0.58
exon number 17
gene id XLOC_017076
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 1903481 ~ 1979652 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGATGTGTGCGCTGGGCTACCGGCGGGTCAACGGGACGATCTACCGGGGTGTGTGTGAACTCTGTCAATGCCACGGACACACAGAGCGCTGTGATGACCTCACTGGACACTGCCTGgGCTGCAGGGATCACACTGTAGGACCGAACTGTGGCCAGTGTGCTCCTGGATATTATGGAGACGCCACTAGAGGAACTGCAGACGACTGTCAGCCCTGCGCCTGTCCTCTGCTGAGCCCCGCAAACAATTTCAGTCCCACGTGTCGTGTGGATGGCAGGGGCGAGGTGATCTGCGACCGATGCCCGCCGGGGTACACCGGATCACGCTGCGACAGGTGTTCTAATGGCTATTTCGGACGTCCCAATATTCCTGGCGGCTCCTgtcagccgtgtgtgtgtagcGGTAACCTGGACCAAACCGCTCCGCTGAGCTGTGACCCGCTGACCGGAGCCTGTCTGCGCTGTCGAGAGGGATACGGAGGAGCTGACTGCGAACGCTGCGCTGACGGATACTTCGGAGATGCCCTCATAGCCAAGAACTGCCAAGCGTGTCAGTGCCACAGTAATGGAtcagtgtcagagctctgccatcAGGAGACAGGACAGTGCCAGTGTCGCCAGCACGTGATTGGACGGCAGTGTGACGAGTGTATGgctggCTCTCATCTGCAGGGCGCTCTCGGCTGTGTCCCGTGCCACTGCAACTCTTTTGGCTCCAAATCGTTTGACTGTGATGAGAGCGGGCAGTGCCGCTGCCAGCCCGGTGTCACGGGACAGAAGTGTGACCGCTGCGCCGCTGGACACTTCAGCTTCCAGGAGGGAGGATGCACACCGTGCCAGTGTGCCCATGTGGGAAATAACTGCGACGCCAGCACGGGCCAGTGTATCTGTCCGCCCAACACCGTGGGAGAGCGATGTGACAAATGTGCGCCCAACCACTGGGGTCACGACATCAGCACGGGCTGCAAGCCGTGTGGCTGTAATGCACTGGGGTCTGTGGCGCAGCAGTGTAACCTGAACACCGGCTGCTGCATGTGCCGAGAGCAGTTCAGGGGGGAGAAATGCGACGAGTGTAAGCTTGGATACAGAGATTTCCCACAATGCATTTCCTGCCAGTGCTCTGCAGCAGGCTCATCGCTGGACACCTGCGACTCAGAGTCAGGCCTCTGCGCATGTGCGGACAGAAGCGGACAGTGCTCCTGCAAGgctAATGTGGAGGGCCAGAAGTGTGAGCGCTGTAAGAGCGGCTCATTCGGCCTCAGTCACAGGAATCCTCTGGGCTGCAGTCGCTGCTACTGCTTTGGCTTGAGCAGCTCCTGTACAGAGGCCACAGGACTCATCCGGATGAGGCTGACTCTGATGCCCGAGCAGACTGTTCTTCCTCTGGTGGACCGTTCTGGACATCAGGAGACCACAGCAGGCATCACTTTCCAGCATCCAGACATCATCGCCACCGCAGACGTGGTCCAGCAGCAGCTGAGTGAGCCGTACTACTGGAGACTGCCCAAACAGTTCAAGCGCTCCATGATAACGGCCTATGGTGGTAAGCTAAGGTACGCCATATATTACGAGGCCCGTGAGGAGACAGGACGCACCTCATATGAGCCTCAGGTCATCATTAAGGGTGGCCCGAATAAAGACAAGATCATGGTGCGGCACATGCCTGCGCTTCAGATTGGCCAGCTGACCCGCCATGAAATCGACATTACAGAGCACGAGTGGAAACACAAGGACGACAGGCCCATGTCTCGAGAGGACTTCATGGACGTTCTGTTTCATGTGGAATATATACTAATAAAGGCTTCGCACGGCAACGTCATGAGGCACAGCAGgatTTCTGAGATCACTCTGGAGGTGGCGGAGGTGGGCAGAGCATCCCAGGACAGTGAAATCGCCCATCAGATTGAGAAATGTGTGTGCCCTCAGGGATACGCCGGTCTCTCCTGTGAGGAGTGTGCGGCCGGGTTCTACAGACTCTCGGTTCTGGCTGGTGGATCTGCATCGCGGGCCGGTTTTGGCAGCTGCGTTCGCTGCCAGTGCAATGGGCACAGCGACTCCTGTGACCCCGAAACCTCCATCTGCCAGAATTGTCAGCACAACACAGTGGGTGATAAGTGTGAGCGCTGTGCTGCGGGGTTTTACGGTGTAGTGCGAGGATTTACAGACGACTGCAAACCCTGCGCCTGTCCACTGCTCAACCCTGAGAACAACTTCAGTCCCACCTGTCAGACGGAGGGTTTTAATGAGTACCGCTGCACCGCCTGTCCTGAAGGCTACGAGGGAAAACACTGTGAAAGGTGCGCTCCTGGTTTTCACGGTGACCCCGGGGTGCTGGGCGGCCGCTGTGAGGAGTGTAAGTGTGACCCGTACGGTGCTTTCCCCTCAGCGTGTGACTCTCACTCTGGGCAGTGCCAGTGCCGTCCCGGTGCCAGCGGACTGAAGTGTGACCAATGCATGGAGAGGCATGTGTGTGGCCCTGAGGGCATCGTGTGTACGTATAACAGCAGCAGTGctaacacactcacacatttgAAGAGG

Function

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0007517 muscle organ development biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0016203 muscle attachment biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0007411 axon guidance biological_process
GO:0030334 regulation of cell migration biological_process
GO:0022011 myelination in peripheral nervous system biological_process
GO:0007155 cell adhesion biological_process
GO:0005604 basement membrane cellular_component
GO:0005102 signaling receptor binding molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060119-1 Predicted to be an extracellular matrix structural constituent. Acts upstream of or within muscle attachment and myelination in peripheral nervous system. Predicted to be located in extracellular region and membrane. Predicted to be active in basement membrane. Is expressed in adaxial cell; head; musculature system; nervous system; and otic vesicle. Used to study congenital merosin-deficient muscular dystrophy 1A and muscular dystrophy. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy; congenital merosin-deficient muscular dystrophy 1A; muscular dystrophy; and myopia. Orthologous to human LAMA2 (laminin subunit alpha 2).

Ensembl:

ensembl_id ENSDART00000164896

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036360 lncRNA upstream 178433 1663759 ~ 1725048 (+) True XLOC_017074
TCONS_00036538 lncRNA upstream 547798 1354663 ~ 1355683 (+) True XLOC_017070
TCONS_00036537 lncRNA upstream 699607 1200292 ~ 1203874 (+) False XLOC_017065
TCONS_00036536 lncRNA upstream 699679 1200292 ~ 1203802 (+) False XLOC_017065
TCONS_00036361 lncRNA downstream 181430 2161082 ~ 2162367 (+) True XLOC_017081
TCONS_00036362 lncRNA downstream 234037 2213689 ~ 2214421 (+) True XLOC_017082
TCONS_00034099 lncRNA downstream 282281 2261933 ~ 2266612 (+) True XLOC_017084
TCONS_00036539 lncRNA downstream 301972 2281624 ~ 2284813 (+) False XLOC_017085
TCONS_00034100 lncRNA downstream 302183 2281835 ~ 2284813 (+) True XLOC_017085
TCONS_00034089 mRNA upstream 11885 1834262 ~ 1891596 (+) True XLOC_017075
TCONS_00034088 mRNA upstream 482476 1412193 ~ 1421005 (+) True XLOC_017073
TCONS_00034087 mRNA upstream 497173 1398564 ~ 1406308 (+) True XLOC_017072
TCONS_00034085 mRNA upstream 510461 1385674 ~ 1393020 (+) False XLOC_017071
TCONS_00034084 mRNA upstream 553319 1349043 ~ 1350162 (+) True XLOC_017069
TCONS_00034092 mRNA downstream 16550 1996202 ~ 2035120 (+) True XLOC_017078
TCONS_00034093 mRNA downstream 59866 2039518 ~ 2054547 (+) True XLOC_017079
TCONS_00034094 mRNA downstream 119591 2099243 ~ 2146546 (+) True XLOC_017080
TCONS_00034095 mRNA downstream 155164 2134816 ~ 2177474 (+) False XLOC_017081
TCONS_00034096 mRNA downstream 159784 2139436 ~ 2206310 (+) False XLOC_017081
TCONS_00034086 other upstream 510826 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034041 other upstream 1585376 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034116 other downstream 928899 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034146 other downstream 3095272 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 3126916 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 3444310 5423962 ~ 5424096 (+) True XLOC_017119
TCONS_00034155 other downstream 3694378 5674030 ~ 5697001 (+) True XLOC_017120

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000135_01069416_01096641.mRNA True 3061 mRNA 0.55 19 CI01000135 1069163 ~ 1096689 (-)