RNA id: TCONS_00034121


Basic Information

Item Value
RNA id TCONS_00034121
length 1647
RNA type mRNA
GC content 0.46
exon number 10
gene id XLOC_017096
representative False

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 3277620 ~ 3288089 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAATAAAGGACTTGGAGCAGCATGTTGCAGGTTGTCTATGCTGTGCGTCAGTGTTGTCACTCATCATCAACGCTGAATGATATTTACATGTAATAAAGCGTTAATGACAGCACTATGAGGACTCTTCTGAGACTGAAGCGGCTGATGCCAGAAGTGCTTTGGACGAAACGATCATGCTCCAGCTCTTCCATCAACAAATCCATCCTTAAACATCTCGCATCCAAAATCATTGCCACGGGTCCAATTTCAGTGGCTGAATACATGAGGGAAGCACTCACCAATCCGGTGTTGggATATTATGTGAAAAATGACATGCTCGGAGCAGGTGGTGATTTTATTACATCACCAGAGATTAGTCAGATTTTTGGCGAGCTTTTAGGAGTTTGGTGCATCAGTGAGTGGATGGCGGCTGGGAAATCCAGTGCGCTGCAGTTAGTGGAGCTCGGACCAGGTCGAGGTTCATTGACCAGTGACATCCTGAGGGTCTTCAGTCAGTTGAAAGGTGTCCTGGGCGAGACTGGGATCTCCATTCATCTTGTGGAGGTCAGCCCAAAGTTAAGCCAAGTTCAGGCTGAATGTCTTACTGGAAATCAGACGCAGACATATGACAACAATCACACTTTTTACCGCAGTGGCACTACATGTACAGGCCTGCCTATATACTGGTATCACAGCATAGAGGACGTCCCAAGAGGTTTCAGCATTTTTCTTGCCCATGAGTTTTTTGACGCTCTTCCCATTCACAAGTTTCAGAGAACGGAGAACGGCTGGCGGGAGGTGCTGGTTGATATTGATCCTGAAAACCCAGGAAAATTGAGATTTGTGGTTTCTCATCGTCCTACCCTGGCCTCCAGCACTCTTATACAGAAAGATGAAAGCAGACGGCACGTGGAAGTGTGTGCTGAGGCTGGAGTCATCGTTCAGAAGCTGGCCAGTCGGATCGCAGAGGACGGAGGCGCAGCCTTAATTGTAGACTATGGGCATGATGGGACAAAAACTGACACTTTCAGAGGTTTTAAAGGCCATCAAATCCATGATGTATTGGAGGCACCCGGCCTGGCAGATTTGACCGCAGATGTGGACTTCAGCTACCTGAGGAAAATGGCAGGTGACCAGGTGATCTGCTTGGGACCCATCACACAGAGATCTTTCTTGAAAAACATGGGCATTGACTCCCGTATGCAGGTTCTACTGAGCAGTAATGACCCGTCCATCAGAGCCCAGCTCATCCACAGCTATGACATGCTGATCAACCCTGAGAAAATGGGTGAGCGGTTCCAGTTTTTCTCTGTGCTCAACACGGCTCGGCTGGCTCAGAGAGAACAAATGCAGAAGAGTACAGTGATGCCTGTGGCAGGATTTACTGAGCTGGAGATGCAATGAAAAGATCTTCTGCTACTAATATGCATGGACTGTACTGATTGTCTGGTTTGTCACAAATCACACAGTAAAACgtttatatattatgttttattgtgtGATTCGTCTTCCCTATTTACAGTCAAGTATAGTTTCTTATCAGAAATTATCGCATTTGTCAATTATACAATCGATTACACAAGAGGTTCTCGTTGCTTGTCCTCCGGACCCACCActcattttatacatattttcctgtataaaacatttaaatctgTTTAACTGAA

Function

GO:

id name namespace
GO:0043009 chordate embryonic development biological_process
GO:0032981 mitochondrial respiratory chain complex I assembly biological_process
GO:0032259 methylation biological_process
GO:0005739 mitochondrion cellular_component
GO:0035243 protein-arginine omega-N symmetric methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
ko04714 Thermogenesis
ko03029 Mitochondrial biogenesis

ZFIN:

id description
ZDB-GENE-060929-628 Predicted to enable protein-arginine omega-N symmetric methyltransferase activity. Involved in mitochondrial respiratory chain complex I assembly. Acts upstream of or within chordate embryonic development. Predicted to be active in mitochondrion. Orthologous to human NDUFAF7 (NADH:ubiquinone oxidoreductase complex assembly factor 7).

Ensembl:

ensembl_id ENSDART00000067397

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00034118 lncRNA upstream 305371 2971476 ~ 2972249 (+) True XLOC_017094
TCONS_00034112 lncRNA upstream 537858 2738498 ~ 2739762 (+) False XLOC_017092
TCONS_00034102 lncRNA upstream 673215 2589414 ~ 2604405 (+) False XLOC_017089
TCONS_00036363 lncRNA upstream 769525 2506900 ~ 2508095 (+) True XLOC_017088
TCONS_00036540 lncRNA upstream 795805 2480910 ~ 2481815 (+) True XLOC_017087
TCONS_00036541 lncRNA downstream 24573 3312662 ~ 3315637 (+) True XLOC_017097
TCONS_00034124 lncRNA downstream 115558 3403647 ~ 3416581 (+) False XLOC_017099
TCONS_00036365 lncRNA downstream 115654 3403743 ~ 3415260 (+) False XLOC_017099
TCONS_00036364 lncRNA downstream 115654 3403743 ~ 3415260 (+) False XLOC_017099
TCONS_00034125 lncRNA downstream 121426 3409515 ~ 3416581 (+) True XLOC_017099
TCONS_00034119 mRNA upstream 146739 3108597 ~ 3130881 (+) False XLOC_017095
TCONS_00034120 mRNA upstream 164683 3111932 ~ 3112937 (+) True XLOC_017095
TCONS_00034117 mRNA upstream 298652 2950005 ~ 2978968 (+) False XLOC_017094
TCONS_00034113 mRNA upstream 532235 2739531 ~ 2745385 (+) False XLOC_017092
TCONS_00034115 mRNA upstream 532947 2741802 ~ 2744673 (+) True XLOC_017092
TCONS_00034123 mRNA downstream 51159 3339248 ~ 3345526 (+) True XLOC_017098
TCONS_00034126 mRNA downstream 628317 3916406 ~ 3927624 (+) False XLOC_017100
TCONS_00034127 mRNA downstream 646427 3934516 ~ 3940286 (+) True XLOC_017101
TCONS_00034128 mRNA downstream 709595 3997684 ~ 4011994 (+) True XLOC_017102
TCONS_00034129 mRNA downstream 763663 4051752 ~ 4054045 (+) True XLOC_017103
TCONS_00034116 other upstream 368955 2908551 ~ 2908665 (+) True XLOC_017093
TCONS_00034086 other upstream 1884965 1385749 ~ 1392655 (+) True XLOC_017071
TCONS_00034041 other upstream 2959515 262995 ~ 318105 (+) False XLOC_017045
TCONS_00034146 other downstream 1786835 5074924 ~ 5075054 (+) True XLOC_017116
TCONS_00034147 other downstream 1818479 5106568 ~ 5112043 (+) False XLOC_017117
TCONS_00034151 other downstream 2135873 5423962 ~ 5424096 (+) True XLOC_017119
TCONS_00034155 other downstream 2385941 5674030 ~ 5697001 (+) True XLOC_017120
TCONS_00034160 other downstream 3047207 6335296 ~ 6335411 (+) True XLOC_017125

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000195_00769738_00775738.mRNA True 2203 mRNA 0.43 8 CI01000195 769738 ~ 776843 (+)