RNA id: TCONS_00037614


Basic Information

Item Value
RNA id TCONS_00037614
length 720
RNA type processed_transcript
GC content 0.46
exon number 4
gene id XLOC_018933
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 25120546 ~ 25171784 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGTTGATGTCTGTTCAGCAGAAGTTGGAGGCCTTCCTGGCGCAGGAAAAAGAGCAGAAAGAGCGAGCACAGAGGTGTTTTGTGTCCTACCTCCGCTCCGTCTATCTGATGAAGAACAAAGATGTCTTTGATGTGTTACAGCTCAAACTCCCTGAATATGCCATGTCTCTGGGTTTGGCGGTGGCACCACGGGTCCGTTTCCTCCTAAAGGCCCAGCAGCAGAGAAGAACAGCAGCACAGGACGACAGCAGCACTGCAGGACACCAGTCTGAAGATGAGCTGCAGAGTTTCACAGCTCAACTCCAACAACAGAAGACCAAATCTGAGCCCTCACAGTCTGAAGAAGAGgaagatgatgatgacgatgatgatgaaggtgatgatgatgatgaagatattAAGGACCAGGATTCATTAAAGCCTCTTTCTCTACTCTGTGGCTTTAATgaagaggatgatgatgatgaccagAGAGAAGCAGACCTGCTGACAGTCAAGTGTAAAGATGTGTTCAATGTCAAAGAAGAGATCAAGGATGAGGAGGTAAATAAACAACACATCTGGTGTCGTTATGGTTAATCAACTCGAGTCATCAGATGCTGGTGGCAAAAAGAGAAGCTTCAGCAgtgaggatgaagatgatgatgatgatgatgatgatgatgaagaacaaACAACACAGAAAAGCAGAAAGAAGCCCAGGACAGAGCCCACAGTCA

Function

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-071022-2 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be involved in rRNA processing. Predicted to be active in nucleus. Orthologous to human DDX10 (DEAD-box helicase 10).

Ensembl:

ensembl_id ENSDART00000149323

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039411 lncRNA upstream 264252 24865149 ~ 24868912 (+) False XLOC_018929
TCONS_00039412 lncRNA upstream 264252 24865603 ~ 24868912 (+) True XLOC_018929
TCONS_00039408 lncRNA upstream 631481 24456028 ~ 24501683 (+) False XLOC_018924
TCONS_00039413 lncRNA downstream 9377 25181016 ~ 25181701 (+) True XLOC_018934
TCONS_00037624 lncRNA downstream 64658 25236297 ~ 25239753 (+) False XLOC_018941
TCONS_00039414 lncRNA downstream 263050 25434689 ~ 25436244 (+) True XLOC_018952
TCONS_00039415 lncRNA downstream 414087 25585726 ~ 25586281 (+) True XLOC_018954
TCONS_00037642 lncRNA downstream 488598 25660237 ~ 25664660 (+) True XLOC_018957
TCONS_00037609 mRNA upstream 13222 25068215 ~ 25119942 (+) False XLOC_018932
TCONS_00037608 mRNA upstream 13222 25068215 ~ 25119942 (+) False XLOC_018932
TCONS_00037610 mRNA upstream 15346 25071805 ~ 25117818 (+) False XLOC_018932
TCONS_00037611 mRNA upstream 29536 25092300 ~ 25103628 (+) True XLOC_018932
TCONS_00037606 mRNA upstream 70574 25054420 ~ 25062590 (+) False XLOC_018931
TCONS_00037615 mRNA downstream 9364 25181003 ~ 25183430 (+) False XLOC_018934
TCONS_00037616 mRNA downstream 15571 25187210 ~ 25197103 (+) False XLOC_018935
TCONS_00037617 mRNA downstream 15590 25187229 ~ 25197103 (+) True XLOC_018935
TCONS_00037618 mRNA downstream 26998 25198637 ~ 25206227 (+) True XLOC_018936
TCONS_00037619 mRNA downstream 44758 25216397 ~ 25219305 (+) True XLOC_018937
TCONS_00037613 other upstream 7702 25120567 ~ 25125462 (+) False XLOC_018933
TCONS_00037604 other upstream 383385 24749662 ~ 24749779 (+) True XLOC_018928
TCONS_00037603 other upstream 464827 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037602 other upstream 585564 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037595 other upstream 896892 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037629 other downstream 174446 25346085 ~ 25346388 (+) True XLOC_018945
TCONS_00037630 other downstream 175142 25346781 ~ 25347003 (+) False XLOC_018946
TCONS_00037631 other downstream 175182 25346821 ~ 25346992 (+) True XLOC_018946
TCONS_00037634 other downstream 194240 25365879 ~ 25366134 (+) True XLOC_018949
TCONS_00037636 other downstream 205316 25376955 ~ 25377279 (+) True XLOC_018951

Expression Profile

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