RNA id: TCONS_00039411


Basic Information

Item Value
RNA id TCONS_00039411
length 2573
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_018929
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 24865149 ~ 24868912 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCACCTTGAGCAGCTGTTCCTCTGGTGCTGAATACACTTGCTATCAAAGTGGCCACATACCAAATCATAGTACTATTGCCAACCAGAGAGAAACCTCATCATATCTCAAAGTGCCCCTTTCAATAAATCATTCTTAGCCGAGCCCCTGGTCGTTAGACGCGCTGTCAGCTGCTGAGACCCTTTTACTCATGCCCTGCATACTTTTCTCCGACGGTTCCCTTCATTCTTTCCCTCCCCTTCTTTCCTTTCGCATCCTCTCTCGATGAAATAGAGCACCTGCACCAGCGCACGGCAGCCAGACGCGGCTCGATGGCAATGCCAGCGTGAAACCAAGCATGACAATTTAGCTGTTAGCTCCGCCCCCGCTTGAATTTCATTGGCCAGTGATGGAGGCGTCGGGGCGGAGATTGGTCGCCTCTCCGTCGCTCTCCATGTAAAAGCCGAGAGCACCGCGTTTCAAGGTGAGTTGGAGCGTGAAGTGGCGTCGGAACCGCAGTATCATGCGCAAAAGAGAAGTCGTGTAAGCAGCCTGTCGGATACCCGGGTACGAGGCTTCGCCTGCTGGGAAAGTTAAAGGTGCGGTGGAGTGGAGTGGACGTCACGCGTTCATGTGTGGGGAGGAAATCCTCAACCTGTATGCGTCATTCGCATTTCATCCCATCGATTGCACTGCGCGCGaAAACTATGACATGTACCATTTTGGAAGATCATGATGGTGAGTATAATTACAGAATCGTCCCTTAAAGCTTATTGTAGTATTTAACTCATGCGTCTGTCATTTGTTGTTAAAATTGAGATACAGTTTGTATTCAGTCAAAGAAAAGTGTTTATGAGGCAATTTGATAGTCAAATAATTACAGTGTACAACAGCATACTGTTTATGCATGATGTGTTCTCTACTAAATTGGTGGGTTTTAAACATCCACAAATCAGCCCAATTGCAGACAGCTGCAAACTCACATGTACAGCATTTCTCTTCCAATTTTAGAGCTCGAATCTGCTATACAGTCCATTTGAGCAATACCTTTAATGGAAACACTGGTGTTCTGCCAATGCTTATAGACTTTAAAAGTTCCATCCACGTCAAAGAGTTTATGGCAAAACAGCTTAGTCTGACATTTCTCAACCAGCATCTTTTTTACTCATCTCCTaaactctgaaaaaaaaacatcccaattATATATACAAGAGAACTAGGTGCATTTCTTTATTGCTAAGAACTGCATGCTTTGTTTACAGTTAAAGTTCTTAAAAGTTCTGATACGATTTGATAAAGTTTTAAGCCATGCAAAATTCAGGcttaattttattacattattaatatcaCAGAGCTTTTTAAAATCCTCCATAAATGCCTCCATTCAGACTGTATTTAGCCGATGAGTGTACTGTCCTTAACCGCTGTGTGTAAACCCACATTCAATGACACACACTCTTTAGAGGCAACTTTAAGAAATACTCCCCTACTCTTGGAAGGTTTTATGAATTCTTATAACCTTGCACGTACAGTATCTGTCTCAGAATGTATTTTATTGCTAAGTTTTATACCACCCACTCACCCATATAAGTTATTAACCTGCTTGAACATGCAGTAAATATGTAGGTATTTGTAGGTACAGCTGTATTATTTCACAGAAAGATGTCTTTGTATTTCTTCTGAAAAAATACAGATGAAAAGATGTTTTCCCTATggtaaaacaaaaaaggttttgtaCTATAATCTGTgctaaaaaaataacacacaGGCCTGAAAATGCTCTTAATTTCCATGCCTGTTTTCTAGCTGAGGGGCAGATAAGGATATTCAGCTGTACCCTTTATCTCACCTTCAGATACGTCATCAGGATGATGTTCAGGAAAGCATGTAATGGTACAAGTTCACAagtgtacagttttttttaatatataacagGCTAATGTTGCAGTCGTCTTAAATACACAGTGAAGTATACCAGCAGCATgcaaaatgtatgttttattccATGAGTGAATATGTTCAATAACTGAGTTTATAAGGAAATACAGGGCTCATTATCaaacatttttagtttaattCTGATTTATgaacttatatatatttttttttatttgaagccTATTCattagcatatttttccatcATAATGTCAATTTTGCTCACATACAATACAACTGATTCAGTACTGTTCGTACCGCttaattttaaagggcacctattttaccgctttttcaagatttaaggtaagtcttttgtgtctccagaatgtgtctgcaaagtttcacctcaaaacacccatcagattgttTATTATACCTCTTAAAACATTGGAATTGTCTGCTCTTAACACTATGTAGCTGTGTTTTGGTGCCTGTACCCTTTAATGTTAATCCTTCCCATGTGTctttcagataaacagcacagtgacagacatgaagaaagcagatctcacgtaacgtttgtgagaaataataCAGTAAGAACTATCCCAAtgattattatttgatgtatttgttgaggagttgcaatgatgagtcacacacaatgtcgttacaaagttcaagcacgcacacacaaagtGGATACACAAACACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039408 lncRNA upstream 363466 24456028 ~ 24501683 (+) False XLOC_018924
TCONS_00039409 lncRNA upstream 363466 24468175 ~ 24501683 (+) False XLOC_018924
TCONS_00039410 lncRNA upstream 370823 24468216 ~ 24494326 (+) True XLOC_018924
TCONS_00037598 lncRNA upstream 426307 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00037597 lncRNA upstream 426307 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00039413 lncRNA downstream 312104 25181016 ~ 25181701 (+) True XLOC_018934
TCONS_00037624 lncRNA downstream 367385 25236297 ~ 25239753 (+) False XLOC_018941
TCONS_00039414 lncRNA downstream 565777 25434689 ~ 25436244 (+) True XLOC_018952
TCONS_00039415 lncRNA downstream 716814 25585726 ~ 25586281 (+) True XLOC_018954
TCONS_00037642 lncRNA downstream 791325 25660237 ~ 25664660 (+) True XLOC_018957
TCONS_00037600 mRNA upstream 328088 24536257 ~ 24537061 (+) False XLOC_018925
TCONS_00037601 mRNA upstream 328088 24536265 ~ 24537061 (+) True XLOC_018925
TCONS_00037599 mRNA upstream 328091 24536233 ~ 24537058 (+) False XLOC_018925
TCONS_00037594 mRNA upstream 452722 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037593 mRNA upstream 452722 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037605 mRNA downstream 116058 24984970 ~ 25046991 (+) True XLOC_018930
TCONS_00037606 mRNA downstream 185508 25054420 ~ 25062590 (+) False XLOC_018931
TCONS_00037607 mRNA downstream 188264 25057176 ~ 25062268 (+) True XLOC_018931
TCONS_00037609 mRNA downstream 199303 25068215 ~ 25119942 (+) False XLOC_018932
TCONS_00037608 mRNA downstream 199303 25068215 ~ 25119942 (+) False XLOC_018932
TCONS_00037604 other upstream 115370 24749662 ~ 24749779 (+) True XLOC_018928
TCONS_00037603 other upstream 196812 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037602 other upstream 317549 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037595 other upstream 628877 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037591 other upstream 1180313 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037613 other downstream 251655 25120567 ~ 25125462 (+) False XLOC_018933
TCONS_00037614 other downstream 264252 25133164 ~ 25171639 (+) True XLOC_018933
TCONS_00037629 other downstream 477173 25346085 ~ 25346388 (+) True XLOC_018945
TCONS_00037630 other downstream 477869 25346781 ~ 25347003 (+) False XLOC_018946
TCONS_00037631 other downstream 477909 25346821 ~ 25346992 (+) True XLOC_018946

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1220727 True 318 lncRNA 0.50 1 NC_048576.1 41566372 ~ 41566689 (+)