RNA id: TCONS_00039409


Basic Information

Item Value
RNA id TCONS_00039409
length 1889
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id XLOC_018924
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 24456028 ~ 24501683 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTATCACTCTGcagatttaattaaataaaaagcacGCGGCTCTCGCGACCTGCTCGGCATAATTGGATGAGCGCTTTCCATGCTCCGAGGTTACCAACTTGTGACTATCTCCCAAAGAAGATGACACGATGCACAGCTAGTTTAGGCCATTTCCCTCTTGGAGCATCAGTGGTCCCTTCTTACCTCTTGTTTCATCAGCCAGCTCTGCTGCAGTGGACCTGGGCAGCCCTCTGTGGCTCCATCTGTGACATGTCTGTCAGTCTAACCTGGAATCAATGCAAGTCACCAGCCAACCAGAGGCAGCCGCTGATAATTTACAGCCGCAGTGTGCTGTCACCAAGACAACCATGCAAAAGGGGAAAGGAAACCTAAATATGATATGGGACGGCAAACTCTGGCGCTGTCTGTCACTGTCGCGGTGTATAGAATGGTGAAAATTGGCATCTTTGAAACAGCGCTGAATGAATGCACAACGGGGAACCAACGGAGAAAGTCGTGCCCTGTTAAAATTCCACAATATTAGACACTCTCTGCTCAGTGGAGCAAAGAAAAACAGCCTTATATGGTTATGGAAATTTTGTGAAATTGGAGGGAAACAAGCCCGCCTCACCATAAGCTGAGGATTGATTCGGCTTTGTGTTCTTCATCTCGAGCAGGGCCGAGTCTCATGCAAAGTTGAAGCCAAATAACGAGGTCCACTCAGCTCCATCTTGAACAAATTTCGTCCACATGGGTCAAGCCATTCAGACTCTCTAATGCTGAAGAGAGAACTAGGATGTAATTGTGTACTAACAGCAGGGAGTTAGAAGCGTCGAGCGGATGGCTGGGGAAGACAGACAGTGAGAGATCAAATGAGACATCTAAAGATCCAAGGCCAACAAACTCTGATTTCTACCCTCGAGCGACTGATGATTTGCCAAGTCAAAGCAAACCTTCTCATCTGTGAGCTTAGTTAGCTTCCAAACCAAAGCCTCATTTGGAGGATGGCAGGCCTGTGAAAAGCCCAAGAAGGCTGCCATTTATGGAAAGAAAGAGATGCTGGTGGATACATGACTTGAGTAGTTTTGTGCCTGATTTTGGCCAAGTCAAAACGAAGAAACAAGAAGTCCcccagtttgttttttttctaaaagacTGCACTGGTACTGAGGacatttttatcttttaaatagCATTAATGTCAGTCCCGTTGCCAGGGGGTGTTTGGATGATTCGGAGAACCCACCcatcactgacaaaggtccagactTTGTcgcatacatgagctcatttttcctattttgactgctgtgCCATCATGGTGAAAATAAACCATTGAAAAAGGCTTAAAGACCAAGCAGAATCTTCTGTTGGGTGACGCTTCGCTGTAACTTCAGCTGATCAGTTTTGGTCAATGCTAACacatatttttcatgagtccaacatccagctgtgcaagaacagaaaaaaaaatctgatgtaaaagaagtcatctttcactaatGTACCTTATACTTGAAAAATGACTGATACAACTTGTAAAGTTGTAGCTTTCTGAGAGCTGCATCTTAATGTATCTTAGAATTTAGCTGTTTAAGAATTGCTATACTCAATTTTGTTtatgctttaaagggatagtacactcaaaaatgaaaatcctgttaTAATTTCTTCAATATCTGTTTGTTCCAAactagtttgagtttctttcctctgttgttTTCTGCACATTTTCTAAAAAATTTAGAAGAGTAATATTACTCAAACCAATTCTCTCACCGATGGCTATGTTTTAAGAATCGAATAGGTTCATGGTCTGAAGCACACAGCGCAGTTGAGTGtgtgaatccacttttgctattttaaggactattaatttgatttctgtaaagtttatatgtattttgaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00037598 lncRNA upstream 29333 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00037597 lncRNA upstream 29333 24423198 ~ 24438842 (+) False XLOC_018922
TCONS_00039170 lncRNA upstream 29598 24423332 ~ 24438577 (+) True XLOC_018922
TCONS_00039171 lncRNA upstream 31190 24436266 ~ 24436985 (+) True XLOC_018923
TCONS_00039169 lncRNA upstream 43984 24423332 ~ 24424191 (+) False XLOC_018922
TCONS_00039411 lncRNA downstream 363466 24865149 ~ 24868912 (+) False XLOC_018929
TCONS_00039412 lncRNA downstream 363920 24865603 ~ 24868912 (+) True XLOC_018929
TCONS_00039413 lncRNA downstream 679333 25181016 ~ 25181701 (+) True XLOC_018934
TCONS_00037624 lncRNA downstream 734614 25236297 ~ 25239753 (+) False XLOC_018941
TCONS_00039414 lncRNA downstream 933006 25434689 ~ 25436244 (+) True XLOC_018952
TCONS_00037594 mRNA upstream 55748 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037593 mRNA upstream 55748 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037592 mRNA upstream 55748 23953181 ~ 24412427 (+) False XLOC_018920
TCONS_00037596 mRNA upstream 55748 24287403 ~ 24412427 (+) True XLOC_018920
TCONS_00037590 mRNA upstream 1321624 23135395 ~ 23146551 (+) True XLOC_018916
TCONS_00037599 mRNA downstream 34550 24536233 ~ 24537058 (+) False XLOC_018925
TCONS_00037600 mRNA downstream 34574 24536257 ~ 24537061 (+) False XLOC_018925
TCONS_00037601 mRNA downstream 34582 24536265 ~ 24537061 (+) True XLOC_018925
TCONS_00037605 mRNA downstream 483287 24984970 ~ 25046991 (+) True XLOC_018930
TCONS_00037606 mRNA downstream 552737 25054420 ~ 25062590 (+) False XLOC_018931
TCONS_00037595 other upstream 231903 24236151 ~ 24236272 (+) True XLOC_018921
TCONS_00037591 other upstream 783339 23684720 ~ 23684836 (+) True XLOC_018919
TCONS_00037570 other upstream 1805611 22636887 ~ 22662564 (+) True XLOC_018904
TCONS_00037569 other upstream 1830766 22635414 ~ 22637409 (+) False XLOC_018904
TCONS_00037551 other upstream 2431998 22036061 ~ 22036177 (+) True XLOC_018892
TCONS_00037602 other downstream 45841 24547524 ~ 24547600 (+) True XLOC_018926
TCONS_00037603 other downstream 166538 24668221 ~ 24668337 (+) True XLOC_018927
TCONS_00037604 other downstream 247979 24749662 ~ 24749779 (+) True XLOC_018928
TCONS_00037613 other downstream 618884 25120567 ~ 25125462 (+) False XLOC_018933
TCONS_00037614 other downstream 631481 25133164 ~ 25171639 (+) True XLOC_018933

Expression Profile

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