RNA id: TCONS_00038691


Basic Information

Item Value
RNA id TCONS_00038691
length 455
RNA type mRNA
GC content 0.49
exon number 6
gene id XLOC_019652
representative True

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 27204382 ~ 27273147 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTATCTGTCTTCACCTCTGTCACGAGCCTTAGAAGAGATTAAACTCTTCATGATGGGTATTTTTATGGACCCAGACATCTACAACTAGAgTCTCACTCGGACTCAAAGCCCGGTGGGCGCAGCACTATGCCCCACTCCACAGCAGACGAGCAGCCACACATCGGCTGCTACAGGCTCCTCAAAACCATCGGCAAAGGCAACTTCGCCAAGGTCAAACTGGCCAAACACATCCTCACCGGCAAAGAGGTGGCGGTGAAGATCATAGACAAGACTCAGCTCAACTCCTCCAGTCTTCAAAAGCTATTTCGGGAGGTGAGGATCATGAAGCTCTTGAATCACCCAAATATCGTGAAGTTATTTGAGGTGATTGAGACTGAGAAGACCCTCTACTTGGTGATGGAATATGCCAGCGGAGGTGAGGTGTTTGATTACCTCGTAGCCCATGGCAGAATGAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0016310 phosphorylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0050321 tau-protein kinase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4145 Predicted to enable protein serine/threonine kinase activity and tau-protein kinase activity. Predicted to be involved in intracellular signal transduction and microtubule cytoskeleton organization. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in dendrite. Predicted to be active in cytoplasm. Orthologous to human MARK2 (microtubule affinity regulating kinase 2).

Ensembl:

ensembl_id ENSDART00000137667

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00038687 lncRNA downstream 21985 27204901 ~ 27208625 (-) False XLOC_019652
TCONS_00039656 lncRNA downstream 39176 27188124 ~ 27191434 (-) True XLOC_019649
TCONS_00038678 lncRNA downstream 219821 27002609 ~ 27010789 (-) True XLOC_019647
TCONS_00039655 lncRNA downstream 405304 26820922 ~ 26825306 (-) True XLOC_019645
TCONS_00039654 lncRNA downstream 405871 26820922 ~ 26824739 (-) False XLOC_019645
TCONS_00038695 lncRNA upstream 156370 27407482 ~ 27413270 (-) True XLOC_019655
TCONS_00038697 lncRNA upstream 190613 27441725 ~ 27443605 (-) True XLOC_019656
TCONS_00038704 lncRNA upstream 307378 27558490 ~ 27566738 (-) True XLOC_019658
TCONS_00038712 lncRNA upstream 894868 28145980 ~ 28234944 (-) True XLOC_019660
TCONS_00039657 lncRNA upstream 1112362 28363474 ~ 28363814 (-) True XLOC_019663
TCONS_00038690 mRNA downstream 9075 27205099 ~ 27221535 (-) False XLOC_019652
TCONS_00038688 mRNA downstream 17444 27204901 ~ 27213166 (-) False XLOC_019652
TCONS_00038683 mRNA downstream 29115 27197711 ~ 27201495 (-) True XLOC_019651
TCONS_00038681 mRNA downstream 35287 27192763 ~ 27195323 (-) False XLOC_019650
TCONS_00038682 mRNA downstream 35354 27193044 ~ 27195256 (-) True XLOC_019650
TCONS_00038692 mRNA upstream 76330 27327442 ~ 27338639 (-) True XLOC_019653
TCONS_00038693 mRNA upstream 105656 27356768 ~ 27362938 (-) True XLOC_019654
TCONS_00038694 mRNA upstream 156369 27407481 ~ 27413294 (-) False XLOC_019655
TCONS_00038696 mRNA upstream 186755 27437867 ~ 27443995 (-) False XLOC_019656
TCONS_00038702 mRNA upstream 231206 27482318 ~ 27507786 (-) False XLOC_019657
TCONS_00038689 other downstream 9306 27204999 ~ 27221304 (-) False XLOC_019652
TCONS_00038674 other downstream 311707 26917928 ~ 26918903 (-) True XLOC_019646
TCONS_00038671 other downstream 528656 26701821 ~ 26701954 (-) True XLOC_019643
TCONS_00038657 other downstream 1059773 26152842 ~ 26170837 (-) True XLOC_019632
TCONS_00038640 other downstream 1507818 25703078 ~ 25722792 (-) False XLOC_019622
TCONS_00038698 other upstream 231037 27482149 ~ 27483038 (-) False XLOC_019657
TCONS_00038703 other upstream 232979 27484091 ~ 27488961 (-) True XLOC_019657
TCONS_00038710 other upstream 695162 27946274 ~ 27946391 (-) True XLOC_019661
TCONS_00038711 other upstream 812094 28063206 ~ 28063322 (-) True XLOC_019662
TCONS_00038723 other upstream 1532715 28783827 ~ 28783944 (-) True XLOC_019671

Expression Profile

//