RNA id: TCONS_00040094



Basic Information


Item Value
RNA id TCONS_00040094
length 561
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_020126
representative True

Chromosome Information


Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 6697927 ~ 6698575 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ACTGAAGGAGATTCTGTTACTCTAAACTCTGGTGTTACTATAatacattgggagaacatgctgTGGAGTTTTGGAGCCGAAAACACTCTTATAGCTAAAATCAACATTAAGGAGCAAATCTTCTCCACATTTGATGGCACTGACAGATTCAGAGACAGACttaagatggacagacagactggatctctgaccatcacaaacATCACATCTGAAAATGCgggaatttataatcttgatatAAGCGGGAAAAAATGGACATCAAAAATATTCAATGTTTCTGTTCATGCACGTCTGCTTGTTCCTGTCCTCATCTTCAACTCTTCTCTGTGTTCATCATCCCAGTATAATTGTTCAGTGttgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaagcagtgtattgtccagcatcattgtgtctgatctcagcatcagtctctctctacctctggaggtggaatatcaggataacaacacctacagctgtgtgaTCAACAACACCATCAGCAACCAGACCACACATCTGGACATCAACACACTCTGT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000135015

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00041868 lncRNA upstream 163913 6533698 ~ 6534014 (+) True XLOC_020122
TCONS_00042032 lncRNA upstream 198625 6494811 ~ 6499302 (+) True XLOC_020120
TCONS_00042031 lncRNA upstream 306310 6384005 ~ 6391617 (+) False XLOC_020117
TCONS_00042030 lncRNA upstream 421744 6269446 ~ 6276183 (+) True XLOC_020114
TCONS_00041867 lncRNA upstream 531175 6165804 ~ 6166752 (+) True XLOC_020111
TCONS_00041870 lncRNA downstream 113574 6812149 ~ 6812872 (+) True XLOC_020131
TCONS_00042033 lncRNA downstream 133198 6831773 ~ 6970044 (+) False XLOC_020132
TCONS_00042034 lncRNA downstream 171716 6870291 ~ 6873611 (+) True XLOC_020135
TCONS_00041871 lncRNA downstream 181166 6879741 ~ 6881278 (+) True XLOC_020136
TCONS_00042035 lncRNA downstream 183735 6882310 ~ 6966536 (+) False XLOC_020132
TCONS_00040092 mRNA upstream 7098 6674992 ~ 6690829 (+) False XLOC_020125
TCONS_00040093 mRNA upstream 7098 6677429 ~ 6690829 (+) True XLOC_020125
TCONS_00040091 mRNA upstream 14629 6613020 ~ 6683298 (+) False XLOC_020125
TCONS_00040090 mRNA upstream 109999 6587280 ~ 6587928 (+) True XLOC_020124
TCONS_00040088 mRNA upstream 182103 6512469 ~ 6515824 (+) True XLOC_020121
TCONS_00040095 mRNA downstream 12974 6711549 ~ 6712197 (+) True XLOC_020127
TCONS_00040096 mRNA downstream 28691 6727266 ~ 6727914 (+) True XLOC_020128
TCONS_00040097 mRNA downstream 41464 6740039 ~ 6741422 (+) True XLOC_020129
TCONS_00040098 mRNA downstream 59166 6757741 ~ 6759019 (+) True XLOC_020130
TCONS_00040099 mRNA downstream 144788 6843363 ~ 6854956 (+) True XLOC_020133
TCONS_00040089 other upstream 120987 6571847 ~ 6576940 (+) True XLOC_020123
TCONS_00040079 other upstream 407577 6290234 ~ 6290350 (+) True XLOC_020115
TCONS_00040065 other upstream 885473 5810877 ~ 5812454 (+) True XLOC_020101
TCONS_00040051 other upstream 1390353 5307485 ~ 5307574 (+) True XLOC_020090
TCONS_00040050 other upstream 1397871 5299951 ~ 5300056 (+) True XLOC_020089
TCONS_00040103 other downstream 244828 6943403 ~ 6948506 (+) False XLOC_020139
TCONS_00040108 other downstream 740952 7439527 ~ 7444022 (+) False XLOC_020142
TCONS_00040109 other downstream 744740 7443315 ~ 7444045 (+) False XLOC_020142
TCONS_00040110 other downstream 745024 7443599 ~ 7444205 (+) True XLOC_020142
TCONS_00040122 other downstream 1566958 8265533 ~ 8265649 (+) True XLOC_020159

Expression Profile


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