RNA id: TCONS_00040177


Basic Information

Item Value
RNA id TCONS_00040177
length 1525
RNA type mRNA
GC content 0.35
exon number 6
gene id XLOC_020201
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 9751117 ~ 9755111 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCACAATAGCTTAAATCAACAGTGTTGTTTGAACAAAGTATTTTCGGATATGTAAGCTTCAAGACTGGATTTTGTTAACGGATATGGTGCtttatgtttttttcagtttttgtcttTGGCTTTTGTGTGGTGTTTCTGGTGTTCAAGCAGAAGAAACAGAGATGAAATCAGTGACTGAGGGAGATTCTGTCACTTTAAACACTGGtgttactgaaataaaaagcaaTGATCAGATACTGTGGTCATTTAGGTTTAATAATACAGAGACTCGTATAGCTGAAATCTATAAACAGAAAAACTATACATATGATAATGAGAATGAGAGATTCAGACACAGACTACAGTTAGATGAgaagactggatctctgaccatcacaaacATCAGCAAAATACACTCTGGACTTTATAAACTAATGATCATCAGTGGAGATAACACATACAAGACTTTCAATATTGATGTCAATGGTATTCTGGCAGTTCCTGTCGTTATCAGAAATTTACCAAGTTTAGCTTCATCAGGATCCTCAAACCAGCATTGTTCAGTGttgtgttcagtggtgaatgtgagcgctgtgagtctctcctggtacaaaggaaacagtgtattgtccagcatcagtgtgtctgatctcagcatcagtctttctctacctctggaggtggaatatcaggataaaaacacctacagctgtgtgaTCAACAACACCATCACAAACCACACCACACATCTGGACATCAGTCAATCCTGTCAGTCAAGATCAGAATCCAGAACTTCACTTCATCTCCTGGTTGTTTTGCTGCTGCTGTTTTTAATCACAGTTACAATCGTGACAATATTCTGTCACCACAAAAAGCATGTAAAACAAAAAGCTCAGACCAATGAGGAAGATATCGATTATACTGAACCAACACTTATTCCACATGGAGATCAGGATACGagaGCTGAAGAACAGGAACAGACGGTGTATTCAGAAGTCTTTTTGAAATGCTGATCATGTAAAGTtgtaatattatacattttaacacAGGTTTGAACATGTTGAAGCTCAAAACCCTTGTTTCTACAAATGGCTGAAATTCACATTTAAGAAACCTTTATTGTCTGAAGATTtcacaaatattaaaatgacaatcCACTTTCAGGAACTGTGATGTGTAGTATACAACAcagtaaaacaaaatgtaaagaaaaaaaaacttgcaggtATTGATGCCTTAAAGATAAAAATATCTTGTAATAATTTAAGTTGATTTAGCAAAGAAacacaacatttttgtttaaacCTGTTTTAGGGTTTACATTTAATTCCAATTCTGTGTTTTGCTGTGCTATGACTCCCTCTGCAGGACAAAGAGCTAAACTGGggataagattaaaaaaaaatgtattgctgcttttataaaaaaatcaGTTCAACTTGATGTAAACTgttaatagttttacatttttgcatacatacatgcatacgtacatgcatacatatttagtctgttgttaaaaataaaattacattttgaaacTCTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000121827

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042066 lncRNA upstream 299891 9437629 ~ 9451226 (+) False XLOC_020198
TCONS_00042065 lncRNA upstream 315133 9429876 ~ 9435984 (+) False XLOC_020198
TCONS_00042064 lncRNA upstream 331715 9411608 ~ 9419402 (+) False XLOC_020198
TCONS_00042063 lncRNA upstream 367633 9359899 ~ 9383484 (+) False XLOC_020197
TCONS_00040166 lncRNA upstream 391714 9352808 ~ 9359403 (+) True XLOC_020196
TCONS_00040181 lncRNA downstream 27843 9782954 ~ 9791367 (+) False XLOC_020205
TCONS_00042067 lncRNA downstream 131634 9886745 ~ 9904498 (+) True XLOC_020211
TCONS_00042068 lncRNA downstream 142860 9897971 ~ 9904623 (+) True XLOC_020212
TCONS_00042069 lncRNA downstream 234794 9989905 ~ 9991494 (+) True XLOC_020216
TCONS_00042070 lncRNA downstream 263789 10018900 ~ 10049233 (+) True XLOC_020219
TCONS_00040175 mRNA upstream 213046 9522971 ~ 9538071 (+) False XLOC_020200
TCONS_00040176 mRNA upstream 220343 9523495 ~ 9530774 (+) True XLOC_020200
TCONS_00040173 mRNA upstream 238056 9472814 ~ 9513061 (+) False XLOC_020199
TCONS_00040174 mRNA upstream 238056 9472820 ~ 9513061 (+) True XLOC_020199
TCONS_00040172 mRNA upstream 292091 9440083 ~ 9459026 (+) True XLOC_020198
TCONS_00040178 mRNA downstream 6819 9761930 ~ 9763971 (+) True XLOC_020202
TCONS_00040179 mRNA downstream 9620 9764731 ~ 9768550 (+) True XLOC_020203
TCONS_00040180 mRNA downstream 17643 9772754 ~ 9775634 (+) True XLOC_020204
TCONS_00040183 mRNA downstream 38812 9793923 ~ 9795657 (+) True XLOC_020206
TCONS_00040184 mRNA downstream 51756 9806867 ~ 9808339 (+) False XLOC_020207
TCONS_00040167 other upstream 367633 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 964824 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 981724 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040135 other upstream 1051884 8695096 ~ 8699233 (+) False XLOC_020176
TCONS_00040122 other upstream 1485468 8265533 ~ 8265649 (+) True XLOC_020159
TCONS_00040182 other downstream 31956 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040207 other downstream 404047 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040218 other downstream 739144 10494255 ~ 10513982 (+) True XLOC_020229
TCONS_00040220 other downstream 798617 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 918040 10673151 ~ 10678490 (+) False XLOC_020234

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_08498082_08533503.mRNA True 4145 mRNA 0.41 17 CI01000030 8497827 ~ 8534156 (-)