RNA id: TCONS_00004118


Basic Information

Item Value
RNA id TCONS_00004118
length 1014
RNA type mRNA
GC content 0.39
exon number 5
gene id XLOC_002123
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 23441488 ~ 23443074 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCATAGAAAGAACAGAGAAAACACTGGTGATATCTACGAAAACCATGGAATAAGAGAGCAATCTGGACATTGGTTCACAGACTGCAACACAACGAGGATCCAGACATCTGAACTCAAAGGTACTGCACATAAATGTGACGacgaaaatataaaaaaagcaacaacctGGAGAATCCAAAAAGGAGGTAGACAAACCACTGATGATATTTATGAGAATGATGTTATAGGATGTATTTCTGGAGAAGAGATCAATGACAACACAATGAGAATCCAGTCATCTGAACTCACAGGAAATGATTTAGAGAGAATGAAAAGCTTCAGAGCAGCACTAGTGTGTTTGATCCTGCTATGTGTTCTTCTGCTGACTGCAGTTTTAGTGCTGAGTGTCTTCATCTATACAAACAGCATAAACTACACTGAAGAGAGACGCCAGCTACTAACCAACATTACAGAAGACAGAGCTAAGCTACTAACCAACATCACCAACCTCACAGAAAAGagtaatcagttattacaaaacaacacaaatctattgAATGAGACAGACCAGCTAAAATGGAAGAAAGAAAATCTTCTGAATCAGCTGAAAAAAATTCTGACTGGAGATGGGTGGACTTACAATCAGTCCAGTTTTTACTACAAGTCCAATATATCAAAGACCTGGATTGTAAGCAGAAGTGACTGTATAGCGAGAGGTGCAGATCTGATCATCATAAACAACCAACAGGAACAAGATTTTGTTATGAGAAAGTCTAATGTTGCTGCAGTCTGGATTGGTCTGAATGACATTATTGTTGAGGGCACATGGAGATGGGTTGATGGCAGTGCAATGAAAAATGATTTGAGCTTCTGGGCATCTGGATCTAATGAACCAAATGGAGACACAAATGAGAACTGTGTTGTGTCTGCTGATAAAGTGACAGAATGGCCTTATACATCAGGGTGGTCTGATGTCTCTTGTGAAAGAACATTTCAGTGGATCTGTGAGAAGAATATTTCACAACTCATATAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110411-239 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including CLEC4C (C-type lectin domain family 4 member C) and CLEC4E (C-type lectin domain family 4 member E).

Ensembl:

ensembl_id ENSDART00000100783

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005892 lncRNA upstream 225609 23141296 ~ 23215879 (+) True XLOC_002121
TCONS_00004113 lncRNA upstream 402198 23034329 ~ 23039290 (+) True XLOC_002119
TCONS_00005891 lncRNA upstream 476062 22960289 ~ 22965426 (+) True XLOC_002117
TCONS_00004111 lncRNA upstream 485118 22938231 ~ 22956370 (+) False XLOC_002116
TCONS_00005890 lncRNA upstream 485651 22942413 ~ 22955837 (+) True XLOC_002116
TCONS_00005708 lncRNA downstream 99543 23542617 ~ 23544066 (+) True XLOC_002128
TCONS_00005893 lncRNA downstream 145601 23588675 ~ 23591058 (+) True XLOC_002131
TCONS_00005894 lncRNA downstream 540233 23983307 ~ 23992917 (+) False XLOC_002132
TCONS_00005709 lncRNA downstream 547559 23990633 ~ 23992917 (+) False XLOC_002132
TCONS_00005710 lncRNA downstream 653165 24096239 ~ 24096470 (+) True XLOC_002134
TCONS_00004115 mRNA upstream 298384 23099365 ~ 23143104 (+) False XLOC_002121
TCONS_00004116 mRNA upstream 302628 23099890 ~ 23138860 (+) False XLOC_002121
TCONS_00004114 mRNA upstream 372165 23060391 ~ 23069323 (+) True XLOC_002120
TCONS_00004112 mRNA upstream 414959 23022263 ~ 23026529 (+) True XLOC_002118
TCONS_00004110 mRNA upstream 515449 22918384 ~ 22926039 (+) True XLOC_002115
TCONS_00004119 mRNA downstream 58952 23502026 ~ 23505767 (+) True XLOC_002124
TCONS_00004120 mRNA downstream 68742 23511816 ~ 23519898 (+) True XLOC_002125
TCONS_00004121 mRNA downstream 77878 23520952 ~ 23523315 (+) True XLOC_002126
TCONS_00004122 mRNA downstream 94502 23537576 ~ 23541888 (+) True XLOC_002127
TCONS_00004123 mRNA downstream 105600 23548674 ~ 23550956 (+) True XLOC_002129
TCONS_00004117 other upstream 23541 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004107 other upstream 534568 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 594084 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004086 other upstream 1405241 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004078 other upstream 1460823 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004125 other downstream 549307 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004130 other downstream 910676 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004134 other downstream 979157 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 983855 24426929 ~ 24435439 (+) False XLOC_002140
TCONS_00004147 other downstream 1217068 24660142 ~ 24664449 (+) False XLOC_002143

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_10528999_10530630.mRNA False 1561 mRNA 0.39 5 CI01000304 10528492 ~ 10530847 (+)